Unable to open DoubletDecon UI in R on Windows machine
xhbkirby opened this issue · comments
Hi,
I'm using a Windows laptop to run DoubletDecon and would like to use the UI version since it gives very useful output files (heatmaps, percentage bar graphs, etc) directly without having to applying custom codes when dealing with the outputs from the command line version. The downloadable zip file didn't work for me (probably because I have a Windows machine). After unzipping, I could see a DoubletDecon.app folder but nothing was executable within this folder. Then I tried your command line code in RStudio after installing and loading the DoubletDecon package. However, I had the following messages after executing the code, with the last line seeming to be the error message:
library(DoubletDecon)
shiny::runGist('a81cdc2aea5742c08e5fc3fa66d47698', launch.browser = TRUE)
Downloading https://gist.github.com/a81cdc2aea5742c08e5fc3fa66d47698/download
Loading required package: shiny
Loading required package: DT
Attaching package: ‘DT’
The following objects are masked from ‘package:shiny’:
dataTableOutput, renderDataTable
Loading required package: dplyr
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
Loading required package: shinyDirectoryInput
Attaching package: ‘shinyDirectoryInput’
The following object is masked from ‘package:utils’:
choose.dir
Loading required package: shinyFiles
Loading required package: ggplot2
Loading required package: reshape2
Loading required package: shinyjs
Don't forget that shinyjs can also be used in Rmd documents!
Attaching package: ‘shinyjs’
The following object is masked from ‘package:shiny’:
runExample
The following objects are masked from ‘package:methods’:
removeClass, show
Loading required package: V8
Using V8 engine 6.2.414.50
Attaching package: ‘V8’
The following object is masked from ‘package:DT’:
JS
Loading required package: umap
Loading required package: shinycssloaders
Loading required package: scales
Loading required package: png
Error: shinyjs: extendShinyjs: functions
argument must be provided.
My RStudio session info as follows:
sessionInfo()
R version 3.6.3 (2020-02-29)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19041)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] png_0.1-7 scales_1.1.1 shinycssloaders_1.0.0
[4] umap_0.2.7.0 V8_3.4.0 shinyjs_2.0.0
[7] reshape2_1.4.4 ggplot2_3.3.3 shinyFiles_0.9.0
[10] shinyDirectoryInput_0.2.0 dplyr_1.0.2 DT_0.16
[13] shiny_1.5.0 DoubletDecon_1.1.6
loaded via a namespace (and not attached):
[1] Rcpp_1.0.5 RSpectra_0.16-0 plyr_1.8.6 pillar_1.4.7 compiler_3.6.3
[6] later_1.1.0.1 tools_3.6.3 digest_0.6.27 lattice_0.20-41 jsonlite_1.7.2
[11] lifecycle_0.2.0 tibble_3.0.4 gtable_0.3.0 pkgconfig_2.0.3 rlang_0.4.10
[16] Matrix_1.3-0 rstudioapi_0.13 curl_4.3 fastmap_1.0.1 stringr_1.4.0
[21] withr_2.3.0 askpass_1.1 generics_0.1.0 vctrs_0.3.6 htmlwidgets_1.5.3
[26] fs_1.5.0 grid_3.6.3 tidyselect_1.1.0 reticulate_1.18 glue_1.4.2
[31] R6_2.5.0 purrr_0.3.4 magrittr_2.0.1 promises_1.1.1 ellipsis_0.3.1
[36] htmltools_0.5.0 colorspace_2.0-0 mime_0.9 xtable_1.8-4 httpuv_1.5.4
[41] stringi_1.5.3 openssl_1.4.3 munsell_0.5.0 crayon_1.3.4
Any thoughts what happened and how to solve this issue? Many thanks and happy new year!
Hi,
Unfortunately, the DoubletDecon UI is not available for Windows operating systems at this time. This is something we hope to be able to provide in the future.
Best,
Erica