willtownes

glmpca

glmpca-py

generalized principal component analysis (GLM-PCA) implemented in python

scrna2019

supporting code for the multinomial single cell RNA-Seq paper

nsf-paper

Nonnegative spatial factorization for multivariate count data

spatial-factorization-py

Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.

quminorm

Turning the quasi-UMI method into a bioconductor package

quminorm-paper

supporting code for the quasi-UMIs single-cell RNA-seq paper

mit6882

Course Project for MIT 6.882- Bayesian Modeling

vamf-paper

supporting code for the Varying-Censoring Aware Matrix Factorization paper

vamf

Varying-Censoring Aware Matrix Factorization R package

edward

Sandbox for experimenting with the Edward probabilistic modeling framework in python.

optimization-practice

sandbox for practice implementing optimization algorithms

patel2014gliohuman

A Bioconductor "Summarized Experiment" from the Patel et al. (2014) paper that performed single cell RNA-Seq analysis on human glioblastoma tissue.

python

Miscellaneous Python stuff I am working on

stan

practicing with stan

cthw

Learning C "the hard way" http://c.learncodethehardway.org/book/

ebola-hackathon-2014

http://hackebolawithdata.challengepost.com/

epidatr

[DRAFT] Delphi Epidata API R Client

gp

Gaussian Processes and Bayesian Optimization

haskell

sandbox for learning Haskell

hca-jamboree-how-many-cells

longevity-paper

Supporting code for the paper "Identifying Longevity Associated Genes by Integrating Gene Expression and Curated Annotations"

marsh

salamander ecology

naivebayes

High performance implementation of the Naive Bayes algorithm in R

ped_parser

A python tool for parsing pedigree files

scLVM

scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources, thereby allowing for the correction of confounding sources of variation.

tensorflow

sandbox for practice with tensorflow models

Web

Learning how to do web stuff like javascript

willtownes.github.io

personal website/blog for technical topics (non-technical blog is at willtownes.wordpress.com )

ZIFA

Zero-inflated dimensionality reduction algorithm for single-cell data