willtownes / vamf

Varying-Censoring Aware Matrix Factorization R package

Varying-Censoring Aware Matrix Factorization

This is an R package for the VAMF algorithm implementation. It is still under development. For more information see the BioRxiv preprint.

Installation

First, make sure rstan is installed and working. Then you should be able to use

install.packages("devtools")
devtools::install_github("willtownes/vamf")

Usage

So far there is only one exported function vamf. Check out the help file in an interactive session or the vignette.

Notes

The core of VAMF is written in the probabilistic programming language Stan. See exec/vamf.stan in the repository.

Contact

Developer: Will Townes