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willtownes
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glmpca
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9
Issues:
34
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10
willtownes/glmpca Issues
Is it appropriate/possible to run IntegrateData following GLM-PCA?
Updated
a year ago
Comments count
1
Batch correction - strange convergence
Updated
2 years ago
Comments count
11
Having a combination of cite-seq and gene expression data as input
Updated
2 years ago
Comments count
2
Results of parameter minibatch = 'none' vs 'memoized'
Closed
2 years ago
Comments count
2
P-values for covariate coefficients?
Closed
2 years ago
Comments count
2
Link to SVA/RUV methods?
Updated
2 years ago
Comments count
2
How to choose the number of principal components in GLM-PCA?
Updated
3 years ago
Comments count
7
Add vignette how to do feature selection
Updated
3 years ago
Comments count
1
Mixed distribution columns
Updated
3 years ago
Comments count
7
Return factors and loadings as matrices instead of data frames
Updated
4 years ago
Comments count
2
Reduce glmpca_family memory consumption
Updated
4 years ago
Comments count
1
Allow predict.glmpca to infer factors from new data given a trained model
Updated
4 years ago
Poisson GLM PCA: Convergence issues with avagrad
Updated
4 years ago
Comments count
1
improve negative binomial overdispersion estimation
Updated
4 years ago
Comments count
3
Feature request: Fixing nb.theta during optimization
Updated
4 years ago
Seurat RunGLMPCA Error
Closed
4 years ago
Comments count
3
Possible usecase for glmGamPoi
Closed
4 years ago
Comments count
1
SpatialFeaturePlot - "could not find function"
Closed
4 years ago
Speed up matrix operations with parallelization
Updated
4 years ago
Feature-specific negative binomial shape parameters
Updated
4 years ago
Disk-based data
Updated
4 years ago
an error of GLMPCA
Closed
4 years ago
Comments count
2
Computation Speed
Closed
4 years ago
Comments count
1
Sparse Matrix support
Closed
4 years ago
Comments count
8
divergence even after increased penalties
Closed
4 years ago
Comments count
7
automatic penalty increase with warning
Closed
4 years ago
Comments count
5
Variance explained
Closed
4 years ago
Comments count
2
GLMPCA on lognormal distributed data
Closed
4 years ago
Comments count
4
Include deviance function
Closed
4 years ago
Comments count
2
Show how to adjust for batch effects in vignette and documentation
Updated
4 years ago
Can glmpca perform factor analysis?
Updated
5 years ago
Comments count
1
Gaussian family
Updated
5 years ago
Error if `L=1`
Closed
5 years ago
Comments count
2
Discuss seed?
Closed
5 years ago
Comments count
2