vdemichev / DiaNN

DIA-NN - a universal automated software suite for DIA proteomics data analysis.

vdemichev/DiaNN Issues

DIANN 1.9 exited
Updated a day ago3
No protein identification despite high MS1 and MS2 signal
Updated a day ago1
Proteogenomics // PG.MaxLFQ vs Genes.MaxLFQ
Updated a day ago11
How to Populate the 'report-first-pass.phosphosites_90' file
Updated 3 days ago2
formats for LINUX for SCIEX .wiff format
Updated 4 days ago5
1.9.1 Linux write manifest error
Updated 4 days ago8
Getting Zeros!!
Updated 7 days ago4
How is a precursor confidently identified?
Updated 8 days ago6
PG.MaxLFQ & SILAC
Updated 9 days ago5
Linux Seg fault - different library used to generate the .quant file
Updated 9 days ago1
Missing columns in parquet, DIA-NN GUI suggestions, and timsTOF diaPASEF data
Updated 9 days ago2
DiaNN 1.9 for Linux an seaching a predicted fasta
Updated 9 days ago1
.dia format generated from Bruker .d folder
Closed 10 days ago4
Top1 method
Updated 11 days ago12
How to get the pr.matrix.tsv from the main out by the user?
Updated 13 days ago3
Can't cross-run
Updated 13 days ago1
Inquiry on Distinguishing Alternative Isoforms with DIA-NN
Updated 16 days ago3
Cannot load file
Closed 17 days ago6
how to calculate pr_matrix.tsv
Closed 18 days ago2
Malformed Library tsv files when Gene ID at the end of fasta description
Updated 21 days ago3
Clarification on Identification and Quantification Numbers in DIANN
Updated 24 days ago1
Quantity.Quality
Updated a month ago8
How to combine same sample (tech replicate) direct DIA data (.raw files from thermo) on DIANN to generate consolidate final results ?
Updated a month ago4
Can DIA-NN detect non-standard amino acids
Updated a month ago4
PEP
Closed a month ago
Spectral library for PTM searches
Updated a month ago1
1.9.x Linux/GLIBC_2.28 version
Updated a month ago2
It doesn't work when I using the AlphaPeptDeep library to analyze my Dimethyl-labeled DIA data
Updated a month ago1
Recommendations on DIA-NN Phosphorylation Reports
Updated a month ago10
Spectral library with TAIR proteome (Arabidopsis)
Closed a month ago2
Quantity.Quality filter and maxLFQ quantitation
Closed a month ago1
error in DIANNtoMSstatsFormat 'Error: column(s) not found: [FragmentQuantCorrected]'
Updated a month ago2
Skyline settings based on DIA-NN pipeline
Updated a month ago2
DIANN CLI settings for peptidomics
Updated a month ago3
Different gradient length
Updated a month ago1
MS2 quantification
Updated a month ago1
slice-PASEF
Updated a month ago1
Computer Freezes after pressing RUN on DIA-NN 1.9
Updated a month ago2
Setting Precursor and Protein PEP in DIA-NN
Updated a month ago4
Premature exit DIA-NN Astral
Closed a month ago3
How to process lactylation proteomics data?
Updated a month ago3
Parquet report mzML scan ID matching
Closed a month ago5
Questions About Some Columns
Updated 2 months ago2
Skyline visualization - peak boundaries
Updated 2 months ago1
Inference removal
Updated 2 months ago1
Linux CLI manual and file streaming
Closed 2 months ago4
No Output is Generated
Updated 2 months ago15
potential unknown modification
Updated 2 months ago7
DIA-NN 1.9, different results for theoriticaly same processing
Updated 2 months ago4
Running second search without generating library?
Updated 2 months ago6