changebio

Face2to3D

3D Facial Reconstruction

cstatgen

C++ statgen library for SEQPower, SEQLinkage and RV-NPL

scDenorm

scDenorm: a denormalization tool for single-cell transcriptomics data

SEQLinkage

Collapsed Haplotype Pattern Method for Linkage Analysis of Next-Generation Sequencing Data

BCA-reproducibility

Notebooks to reproduce the results of Brain Cell Atlas

biopython.github.io

Source of biopython.org website, migrated from MediaWiki

bioworkflows

In-house computational biology workflows at Columbia Neurology

changebio

cugg

Collection of (in-house) Python utilities from Gao Wang's Group

docker-stacks

Ready-to-run Docker images containing Jupyter applications

GraphPed

A novel graph-based visualization method for large and complex pedigrees

GraphPed1

a novel graph-based visualization method for large and complex pedigrees

lazzzy-lab

Make Work Simple But Significant!!!

ldsc

LD Score Regression (LDSC)

plotped

PyDESeq2

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

researchsummary

Daily research summary on my projects

rocker-versioned2

Run current & prior versions of R using docker. rocker/r-ver, rocker/rstudio, rocker/shiny, rocker/tidyverse, and so on.

scDenrom-reproducibility

scgsim

single-cell gene simulation

SegFace

3D Facial Segmentation

statgen-courses

Tutorials for statistical genetics short courses

stem_cells_hippocampus_jessberger_lab

Stem cells in adult hippocampus (Jessberger lab UZH)

SuSiEGLMM.jl

Julia package for sum of single effects regression with generalized linear mixed model

test001

tutorials

Tutorials on phylogenetic and phylogenomic inference

UKBB_GWAS_dev

Data and analysis for pleiotropy project with UKB 500K

warp

WDL Analysis Research Pipelines

warp-tools

This repository contains all containers that WARP uses.

xqtl-pipeline

Molecular QTL data analysis pipeline developed for ADSP functional genomic consortium