glycans

There are 1 repository under glycans topic.

• glycowork

  BojarLab / glycowork

  Package for processing and analyzing glycans and their role in biology.

  machine-learningglycobiologyglycansbioinformaticspythoncomputational-biologydata-sciencemolecular-biologyopen-source
  Language:Jupyter Notebook 52
• glycosylator

  tlemmin / glycosylator

  Framework for the rapid modeling glycans and glycoproteins.

  glycosylationglycoinformaticsglycan-structuresglycan-analysisglycanscharmmpythonglycosylator
  Language:Rich Text Format 28

• BojarLab / SweetNet

  Graph convolutional neural networks for analyzing glycans [LEGACY; use glycowork implementation]

  machine-learningglycobiologyglycansbioinformatics
  Language:Jupyter Notebook 18

• midas-wyss / sweettalk

  Deep learning-based language model for glycan sequences

  glycanslanguage-model
  Language:Jupyter Notebook 15

• kalininalab / GlyLES

  A tool to convert IUPAC representations of glycans into SMILES strings.

  glycansiupacsmilesantlr4grammar-parser
  Language:Python 9

• BojarLab / CandyCrunch

  Predicting glycan structure from LC-MS/MS data

  bioinformaticsglycansmachine-learningmass-spectrometrypython
  Language:Jupyter Notebook 8

• glygen-glycan-data / GNOme

  GNOme - Glycan Naming and Subsumption Ontology.

  glycansobofoundrysubsumption
  Language:JavaScript 7

• Ojas-Singh / Re-Glyco

  The Python software re-glycosylates protein structures using MD simulation results from the glycoshape database. It takes alphafold protein structures as input and outputs modified structures with glycans added at appropriate sites.

  alphafold2glycansglycoproteinglycosylation
  Language:Python 7

• midas-wyss / sweetorigins

  classifierglycanslanguage-modelpytorch
  Language:Jupyter Notebook 6

• BIOS-IMASL / chesweet

  CheSweet: chemical shifts for glycans

  chemical-shiftglycanspython
  Language:Python 3

• emeinhardt / gregex

  A software library and command-line tool for investigating and working with linear code representations of glycans and regular-expression-like operators.

  glycansglycoinformatics
  Language:Jupyter Notebook 1

• margotbligh / GlycoAnnotateR

  R package for calculation and mass spectrometry annotation of glycans

  glycan-analysisglycan-structuresglycansglycobiologymass-spectrometry
  Language:Python 1

• Old-Shatterhand / SuperSweetNet

  GNN model to learn latent space representations of glycans on an atomic level

  glycansglycobiologygnnssmiles
  Language:Python 1

• amanzadi / awesome-glyco

  Community-curated list of software packages and data resources for Glycoscience

  awesomeawesome-listawesome-listsglycansglycobiologyglycanglycoproteinopen-sourcesystems-biologybioinformatics
  0

• BojarLab / scGlycomics_b16_branching

  Predicting single-cell glycosylation features from scRNA-seq

  deep-learningglycansglycobiologymachine-learning
  Language:Jupyter Notebook 0

• PabloGGaray / chesweet

  CheSweet: chemical shifts for glycans

  carbohydrateschemical-shiftglycanspython
  Language:Python 0

• dev-ev / gag-search-dashboard

  Script for quantification of glucosaminoglycans (GAGs) based on Proteome Discoverer output, with web-interface powered by Bokeh

  mass-spectrometryorbitrap-msproteome-discovererglycansglycobiologyclustering
  Language:Python

• Dialpuri / PrivateerDatabase

  Carbohydrate validation reports calculated from the PDB and PDB-REDO databases

  glycansprivateerysbl

• haddocking / glycan-docking-benchmark

  A protein-glycan benchmark, ready for use with HADDOCK

  proteinsglycanscomplexesdockingmodellingbioinformaticsutrecht-universityhaddock
  Language:Python

• tabacco / glycan

  Glycan composition calculator

  sciencebiochemistryglycans
  Language:Go