higlass

higlass

Fast, flexible and extensible genome browser.

higlass-python

Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer

simple-httpfs

clodius

Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.

higlass-docker

Builds a docker container wrapping higlass-server and higlass-client in nginx

higlass-manage

A utility script to manage local docker instances of HiGlass

higlass-server

Server component for HiGlass that manages and serves tiled data

scipy19

Slides and demos from our SciPyConf 2019 talk

higlass-pileup

higlass-arcs

HiGlass track for displaying arcs between disconnected regions

higlass-app

A fully featured application around HiGlass for viewing, exploring, and annotating 1D and 2D genomic data

higlass-multivec

Multivec Tracks for Higlass

higlass-sequence

Nucleotide sequence track for HiGlass

higlass-transcripts

Gene transcripts track for HiGlass

gene_annotations

higlass-orthologs

higlass-bigwig-datafetcher

higlass-vcf

higlass-zarr-datafetchers

Plugin data fetchers for HiGlass, supporting visualization of Zarr-based files located in object storage systems

higlass-clinvar

Display ClinVar data in HiGlass

higlass-gnomad

Display gnomAD data in HiGlass

range-track

A plugin track for displaying ranges in HiGlass

higlass-app-content

Content served through higlass-app like news, examples, plugins

higlass-barbell

higlass-labelled-points-track

higlass-plugins

higlass-register

Helper tool to register pluggable tracks

higlass-schema

Pydantic models for HiGlass

higlass-text

Display text in HiGlass

higlass-widget

A standalone Jupyter Widget for HiGlass