kushalkolar

MESmerize

Platform for Calcium Imaging analysis. DEPRECATED.

lazytensor

An interface for lazy evaluation of tensors in linear algebra routines

mesmerize-viz

Widgets for calcium imaging analysis visualization in notebooks

caiman-core

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

serenity

Realtime analysis & visualization of calcium imaging data

admin-requests

auto-cnmf

An attempt at automated CNMF using gradient descent

band-artifact-removal

Algorithm for removal of noise bands from calcium imaging data

caiman-napari-prototype

prototype caiman plugin for napari

ccn-template

Template repository for CCN software projects

Chen_Institute_DataSAI_for_Neuroscience

EngComp4_landlinear

Using computational thinking to get deep insights on the foundations of linear algebra

gpu-passthrough-tutorial

improv

Adaptive Platform for Neuroscience Experiments

jupyter_rfb

Remote Frame Buffer for Jupyter

kushalkolar

LinAlg4DataScience

Code that accompanies the book "Linear Algebra for Data Science"

localmd

Accelerated local matrix decomposition for calcium imaging data

napari

napari: a fast, interactive, multi-dimensional image viewer for python

Numpy-Tutorial-SciPyConf-2022

Public GitHub repo for SciPy 2022 tutorial (Introduction to Numerical Computing With NumPy)

ophys-sandbox

pipeline_2p

Preprocessing pipeline for 2p imaging data, VR behaviour data and synchronization between the two.

pygfx

Powerful and versatile visualization for Python.

pynapple

PYthon Neural Analysis Package :pineapple:

rnn-go-brr

Sentient food pellet grabber project for deep learning class

rtes-project

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

tapnet

tifffile

Read and write TIFF files. Forked from https://pypi.org/project/tifffile

wgpu-py

Next generation GPU API for Python