Nick Semenkovich's repositories
chrome-force-pdf-inline
A Chrome extension to force PDFs to render inline (overrides Content-Disposition: attachment).
serpent-methylation-pipeline
An efficient, documented, reproducible Snakemake methylation analysis pipeline for BS-seq and EM-seq samples, including cfDNA.
aldine-powershell-computer-config
Intune-deployed Powershell configuration for Azure Active Directory-joined machines with OneDrive folder redirection.
chrome-limit-cookie-lifetime
Persistent cookies are annoying. This Chrome extension limits cookie lifetime to a user-adjustable value.
sts-risk-calculator-cli
A Python command line tool to query the Society of Thoracic Surgeons (STS) Adult Cardiac Risk Calculator API with bulk patient records.
celfie-simplified
A quick overhaul of CelFiE — cfDNA cell type of origin estimation
gordon-lab-enveloper
Mass spec partial isotopic enrichment predictions using isodist.
academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
bioconda-recipes
Conda recipes for the bioconda channel.
MuSiC
Multi-subject Single Cell Deconvolution
pynecone-examples
A repository full of Pynecone example apps.
pyscaffold
đź› Python project template generator with batteries included
python-template-repo
Template repository for Python projects
scvi-tools
Deep probabilistic analysis of single-cell omics data
semenko.github.io
My personal homepage.
wgbs_tools
tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies