Devon Ryan's repositories
ChromosomeMappings
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
MethylDackel
A (mostly) universal methylation extractor for BS-seq experiments.
bioconda-recipes
Conda recipes for the bioconda channel.
Clair3
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
conda-forge-pinning-feedstock
A conda-smithy repository for conda-forge-pinning.
epiAneufinder
R package to detect breakpoints and assign somies to scATAC-seq data
Mana
Command-line tool that analyses ONT alignments (.bam) to report quality control statistics
Mastodon-Bioinformatics
Most simple webapp to bulk follow bioinformatics accounts on Mastodon.
r-airr-feedstock
A conda-smithy repository for r-airr.
r-base-feedstock
A conda-smithy repository for r-base.
r-brisc-feedstock
A conda-smithy repository for r-brisc.
r-clustercrit-feedstock
A conda-smithy repository for r-clustercrit.
r-compositions-feedstock
A conda-smithy repository for r-compositions.
r-distr6-feedstock
A conda-smithy repository for r-distr6.
r-fstcore-feedstock
A conda-smithy repository for r-fstcore.
r-lmeinfo-feedstock
A conda-smithy repository for r-lmeinfo.
r-magick-feedstock
A conda-smithy repository for r-magick.
r-mlr3proba-feedstock
A conda-smithy repository for r-mlr3proba.
r-qs-feedstock
A conda-smithy repository for r-qs.
r-r2dii.data-feedstock
A conda-smithy repository for r-r2dii.data.
r-rjava-feedstock
A conda-smithy repository for r-rjava.
SibeliaZ
A fast whole-genome aligner based on de Bruijn graphs
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
TwoPaCo
A fast constructor of the compressed de Bruijn graph from many genomes