Welcome to 🌶️SALSA! Single Cell Allele Specific Analysis
Here you will find a workflow to analyze single cell allele-specific expression and chromatin accessibility obtained from 10X Genomics Single Cell Gene Expression and Single Cell ATAC datasets. To get started follow along with one of our tutorials.
If you use 🌶️SALSA please cite the following manuscript
Wilson PC, Muto Y, Wu H, Karihaloo A, Waikar SS, Humphreys BD.
Multimodal single cell sequencing implicates chromatin accessibility and genetic background in diabetic kidney disease progression
Nat Commun 13, 5253 (2022).
https://doi.org/10.1038/s41467-022-32972-z
PMID: 36068241
Thanks!
Parker
Visit the Wilson lab website:
www.parkerwilsonlab.com
Visit the Humphreys lab website:
www.humphreyslab.com
Check out our interactive datasets with Kidney Interactive mulTiomics (KIT):
http://humphreyslab.com/SingleCell/
Find us on Twitter:
@parkercwilson
@HumphreysLab
Find us on Docker Hub:
p4rkerw@dockerhub