sanger / quanthub

Provides parsing and visualisation of the concentration information from qPCR and plate readers

sanger/quanthub Issues

Y24-075 Add Squix printers
Closed 2 months ago
DPL-1095 - As developers we would update node to 20.10.0 as it is a long supported version
Closed 6 months ago
DPL-1019 - As a team lead (Liz) I would like to be able to upload tapestation quants for so we can download the quantfile from limber to support pooling for the scRNA pipeline
Closed 5 months ago2
Depfu Error: No dependency files found
Closed 8 months ago2
DPL-966 Replace yarn with npm as yarn is no longer required and is causing installation problems
Closed 9 months ago1
DPL-890-3 Replace Jest with Vitest to ensure maintainability and security and enable us to upgrade to Vue 3
Closed 8 months ago1
DPL-890-2 Replace webpack with Vite to ensure maintainability and security and enable us to upgrade to Vue 3
Closed 8 months ago1
DPL-890-5 Upgrade Quanthub to latest version of Vue 2 to ensure maintainability and security and enable us to upgrade to Vue 3
Closed 6 months ago1
DPL-890-6 Upgrade Quanthub to Vue 3 to ensure maintainability and security
Closed 6 months ago1
DPL-890-4 - As developers we would like to Replace Bootstrap with in-house components and styling to ensure maintainability, allow us to upgrade to Vue 3 and improve the look and feel and impose consitency across our applications
Closed 7 months ago1
DPL-890-1 - Upgrade node to a long term supported version(>=18) to ensure maintainability and security and enable us to upgrade to Vue 3
Closed 10 months ago1
DPL-890 - As developers we need to upgrade Quanthub to Vue 3 as Vue 2 is out of support in December 2023
Closed 6 months ago2
DPL-849 - As developers we need to understand the work needed to upgrade to Vue 3 as Vue 2 support ends in December 2023
Closed a year ago
DPL-841 Quanthub Heron tapestation pools remove the 1.62x and regression adjustments
Closed a year ago
DPL-670-5 Pass a QuantHub specific API key to Sequencescape calls
Closed a year ago
DPL-612 As a Heron TL (Rory Y) I would like to apply a calibration curve to the Quanthub processing of Heron QC Tapestation data, instead of the existing multiplying factor so that low concentrations do not fail sequencing.
Closed a year ago4
DPL-599 Change to Heron Quanthub process for tapestation output data
Closed 6 months ago3
DPL-425 - As an R&D scientist I would like add Hi-C quants to quanthub to automate the process to reduce the time and effort taken to perform quants, persist the quants, support the pooling and reduce the chances for errors
Closed 2 years ago3
DPL-405 [BUG] - Due to wider barcode changes when plate reader quants are uploaded the barcode is no longer correct
Closed 2 years ago
DPL-295 [BUG] If a value in a triplicate is not completed it sets the average of the triplicate to zero (C=S, V=3)
Closed 2 years ago1
DPL-266 - Warning for tapestation quants where concentration is below 5nM (C=M, V=4)
Closed 2 years ago3
DPL-263 - As a Heron lab user I would like to be able to upload Heron qPCR quants so I can see the concentrations in Limber (C=M, V=4)
Closed 6 months ago5
DPL-210 - As R&D I would like the tapestation quants to use the same CV% method as the current platereader triplicate analysis used elsewhere in ops (C=S, V=3)
Closed 3 years ago
DPL-166 Upgrade Quanthub to HTTPS (S=M,V=4)
Closed 2 years ago
DPL-131 - As R&D I need to add v2 assay types so we can distinguish the assays carried out on the new plasticware [s]
Closed 3 years ago
DPL-109 - As developers we need to ensure that tube based quants can be exported to Sequencescape [Heron] [TOR-67] (S)
Closed 3 years ago1
DPL-108 - As R&D we need a new assay type for Heron [Heron] [TOR-67] (S)
Closed 3 years ago1
DPL-107 - As R&D I would like support for uploading of tube based tapestation csvs [Heron] [TOR 67]
Closed 3 years ago6
GPL-nnn Upload free-form QC results
Closed 6 months ago1
GPL-815 Migration off travis
Closed 3 years ago
GPL-838 new method of DNA quantification: Tapestation (C=M, V=?)
Closed 2 years ago10
GPL-466 New quant type for Heron 384 cDNA
Closed 4 years ago
GPL-467 New quant type for Heron 96
Closed 4 years ago
GPL-432 detection of contamination on the cDNA XP plate via Quant Hub
Closed 4 years ago
GPL-311 highlight samples for ukb becuase
Closed 3 years ago1
GPL-310 Sample Management - calculate averages in Quanthub because
Closed 6 months ago1
GPL-301 Addition of new types in Quanthub for QC file uploads for Duplex Seq
Closed 3 years ago
GPL-245 As a R&D lead for quant hub (Scott Goodwin) I would like automated outlier handling algorithm to have a fast auditable process to recover from gross errors.
Closed 3 years ago7
GPL-244 As a R&D lead for quant hub (Scott Goodwin) I would like to remove the factor that QuantHub uses to convert CopyCount’s output into library concentrations so the ‘fudge factor’ can be changed in the lab without a software change (will be in the excel template)
Closed 3 years ago
GPL-243 As an R&D lead for quant hub (Scott Goodwin) I would like Quadruplicate rather than triplicate measurements because standards which normally sit in the B1 quadrant of the 384 well qPCR plate are no longer required, and the space they occupy can be more advantageously used by an additional replicate
Closed 3 years ago1