Christian Brandt's repositories
What_the_Phage
WtP: Phage identification via nextflow and docker or singularity
docker_pipelines
Nextflow/Docker pipelines for "easy use"
bioinformatics_side
Summary of important things for me:
16S-rDNA-dada2-pipeline
**DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version
nanopore_sync_away
easy file transfer of fast5 while running a sequencing run
coding_excercises
A public repo of coding exercises
cwa-app-android
Native Android app using the Apple/Google exposure notification API.
fieldbioinformatics
The ARTIC field bioinformatics pipeline
FindTelomeres
A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
github-markdown-toc
Easy TOC creation for GitHub README.md
mkdocs-material
A Material Design theme for MkDocs
MUFFIN_Documentation
https://rvandamme.github.io/MUFFIN_Documentation/#introduction
replikation
profile readme
SARS-CoV-2-Variants
This project tries to give a glimpse of the different variants of SAR-CoV-2 in the world.
sars-like-cov
This is a one-off Nextstrain build for SARS-like coronaviruses