replikation

What_the_Phage

WtP: Phage identification via nextflow and docker or singularity

poreCov

SARS-CoV-2 workflow for nanopore sequence data

docker_pipelines

Nextflow/Docker pipelines for "easy use"

bioinformatics_side

Summary of important things for me:

MPOA

Mask Pathogens for Outbreak Analysis

nanopore_sync_away

easy file transfer of fast5 while running a sequencing run

ampliseq

16S rRNA amplicon sequencing analysis workflow using QIIME2

bacannot

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation

blastn_so_hot

bx_pgap

pgap_container

coding_excercises

A public repo of coding exercises

CV.js

D3/Bootstrap CV generator

cwa-app-android

Native Android app using the Apple/Google exposure notification API.

fieldbioinformatics

The ARTIC field bioinformatics pipeline

github-markdown-toc

Easy TOC creation for GitHub README.md

mkdocs

Project documentation with Markdown.

mkdocs-material

A Material Design theme for MkDocs

MUFFIN_Documentation

https://rvandamme.github.io/MUFFIN_Documentation/#introduction

nextclade

Viral genome alignment, clade assignment, mutation calling, and quality checks

norse

GUI for nanoopore sequencing

readfish

Read Until scripts

replikation

profile readme

samplot

Plot structural variant signals from many BAMs and CRAMs

SARS-CoV-2-Variants

This project tries to give a glimpse of the different variants of SAR-CoV-2 in the world.

sars-like-cov

This is a one-off Nextstrain build for SARS-like coronaviruses

seqrs

sequence tools via rust

sourmash

Compute and compare MinHash signatures for DNA data sets.

VarSkip

VarSkip multiplex PCR designs for SARS-CoV-2 sequencing

wf-artic

ARTIC SARS-CoV-2 workflow and reporting

WtP.github.io