norse

NanOpoRe SEquencing

GUI for nanopore data transfer to a server and sample informations. All informations are collected in a run_info.txt file that is stored with the uploaded data.

Content

Install norse
- via conda
- via docker
Usage

Installation

via conda:

conda installation here

# choose a suitable install location (e.g home dir)
git clone https://github.com/t3ddezz/norse.git
cd norse
# conda installation
conda env create -f environment.yml
conda activate norse
python setup.py install

Troubleshooting with this error: "This application failed to start because no Qt platform plugin could be initialized. Reinstalling the application may fix this problem. Available platform plugins are: eglfs, linuxfb,xcb."
- then try this:

sudo apt-get install libxkbcommon-x11-0
sudo apt install libxcb-xinerama0

Check if the install worked
- Type (in the norse environment):

conda activate norse
norse -v

via docker:

# clone git repository and navigate into the dir
git clone https://github.com/t3ddezz/norse.git && cd norse

# create docker image via
docker build -t norse:build .

# run docker image via (port mapping is missing here!!!)
docker run --rm \
  -u qtuser \
  -v /tmp/.X11-unix:/tmp/.X11-unix \
  -e DISPLAY=unix$DISPLAY \
  --network host \
  -v $HOME:/home/qtuser \
  -v $PWD:/upload \
  norse:build \
  norse -r

or use the newest docker from dockerhub:

# run docker image from dockerhub (insert respective VERSION)
docker run --rm \
  -u qtuser \
  -v /tmp/.X11-unix:/tmp/.X11-unix \
  -e DISPLAY=unix$DISPLAY \
  --network host \
  -v $HOME:/home/qtuser \
  -v $PWD:/upload \
  dataspott/norse:VERSION \
  norse -r

Basic usage

Run norse -r to start the program or norse -v to show the program version.

replikation / norse