replikation

bootstrap

The most popular HTML, CSS, and JavaScript framework for developing responsive, mobile first projects on the web.

text-generation-webui

A Gradio web UI for Large Language Models.

streamlit

Streamlit — A faster way to build and share data apps.

typst

A new markup-based typesetting system that is powerful and easy to learn.

sd-webui-controlnet

WebUI extension for ControlNet

return-youtube-dislike

Chrome extension to return youtube dislikes

neural-enhance

Super Resolution for images using deep learning.

sd-webui-animatediff

AnimateDiff for AUTOMATIC1111 Stable Diffusion WebUI

bioicons

A library of free open source icons for science illustrations in biology and chemistry

ggkegg

Analyzing and visualizing KEGG information using the grammar of graphics

hAMRonization

Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure

pod5-file-format

Pod5: a high performance file format for nanopore reads.

taxprofiler

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

BactDating

Bayesian inference of ancestral dates on bacterial phylogenetic trees

nanodisco

nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nanopore sequencing.

abritamr

A pipeline for running AMRfinderPlus and collating results into functional classes

wf-artic

ARTIC SARS-CoV-2 workflow and reporting

metagenomics

A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies

genome-grist

map Illumina metagenomes to genomes!

hAMRonization_workflow

Harmonization of AMR predictor tool outputs

msamtools

Metagenomics-related extended functionalities to samtools

SARS-CoV-2-analyses

Collection of R scripts for SARS-CoV-2 (variant) analyses

foldvis

Protein visualization without the pain

LCS

SARS-CoV-2-Variants

This project tries to give a glimpse of the different variants of SAR-CoV-2 in the world.

ConsensusPrime

plot_volt_temp_R

Plot voltage-temperature from an Osan Pathfinder SQLite database file

2023-Workshop-MISSIoN-Nanopore

A practical introduction to long-read bioinformatics for bacterial genome reconstruction in the context of the Kenya MISSIoN project.

VLQ-nf

Estimate SC2 lineage abundances from wastewater samples

Wastewater_Contextual_Data_Specification

A data specification for harmonizing Wastewater pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via metadata template(s), supported by field and reference guides as well as different curation and new term request SOPs.