replikation

bootstrap

The most popular HTML, CSS, and JavaScript framework for developing responsive, mobile first projects on the web.

text-generation-webui

A Gradio web UI for Large Language Models.

streamlit

Streamlit — A faster way to build and share data apps.

typst

A new markup-based typesetting system that is powerful and easy to learn.

sd-webui-controlnet

WebUI extension for ControlNet

return-youtube-dislike

Chrome extension to return youtube dislikes

neural-enhance

Super Resolution for images using deep learning.

sd-webui-animatediff

AnimateDiff for AUTOMATIC1111 Stable Diffusion WebUI

bioicons

A library of free open source icons for science illustrations in biology and chemistry

gggenomes

A grammar of graphics for comparative genomics

ggkegg

Analyzing and visualizing KEGG information using the grammar of graphics

hAMRonization

Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure

pod5-file-format

Pod5: a high performance file format for nanopore reads.

BactDating

Bayesian inference of ancestral dates on bacterial phylogenetic trees

nanodisco

nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nanopore sequencing.

abritamr

A pipeline for running AMRfinderPlus and collating results into functional classes

wf-artic

ARTIC SARS-CoV-2 workflow and reporting

genome-grist

map Illumina metagenomes to genomes!

metagenomics

A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies

R-Markdown-Parallax

How to use parallax on your R Markdown output

hAMRonization_workflow

Harmonization of AMR predictor tool outputs

msamtools

Metagenomics-related extended functionalities to samtools

SARS-CoV-2-analyses

Collection of R scripts for SARS-CoV-2 (variant) analyses

foldvis

Protein visualization without the pain

LCS

SARS-CoV-2-Variants

This project tries to give a glimpse of the different variants of SAR-CoV-2 in the world.

ConsensusPrime

plot_volt_temp_R

Plot voltage-temperature from an Osan Pathfinder SQLite database file

2023-Workshop-MISSIoN-Nanopore

A practical introduction to long-read bioinformatics for bacterial genome reconstruction in the context of the Kenya MISSIoN project.

VLQ-nf

Estimate SC2 lineage abundances from wastewater samples