Bioinformatics Group @ SMU

clusterProfiler

:bar_chart: A universal enrichment tool for interpreting omics data

ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

enrichplot

Visualization of Functional Enrichment Result

ChIPseeker

:dart: ChIP peak Annotation, Comparison and Visualization

MicrobiotaProcess

:microbe: A comprehensive R package for deep mining microbiome

ggbreak

:broken_heart: An implementation of scale functions for setting axis breaks of a 'gg' plot.

DOSE

:mask: Disease Ontology Semantic and Enrichment analysis

aplot

Decorate a plot with associated information

treeio

:seedling: Base Classes and Functions for Phylogenetic Tree Input and Output

ggtreeExtra

:lemon: Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”

biomedical-knowledge-mining-book

:books: Biomedical knowledge mining using GOSemSim and clusterProfiler

GOSemSim

:golf: GO-terms Semantic Similarity Measures

MicrobiomeProfiler

:microbe: A shiny package for microbiome functional enrichment analysis

ProjectYulab

:next_track_button: Small coding tasks that enable you to participate in our development

yulab.utils

Miscellaneous functions commonly used by 'YuLab-SMU'.

tigeR

🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package

GeoTcgaData

Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA

ggfun

useful functions for ggplot

docs

ggtreeDendro

Drawing 'dendrogram' using 'ggtree'

yulab-smu.github.io

:house: Homepage for YuLab-SMU

shinyTempSignal

Explore Temporal and Other Phylogenetic Signals

HPO.db

MPO.db

tigeR.data

Supplemental-MMINP

UltraPseR

Wappers for UltraPse in R

.github

eclust

Base Classes and Functions for Clustering Experimental Assays

MSGNN