YuLab-SMU / clusterProfiler

:bar_chart: A universal enrichment tool for interpreting omics data

https://yulab-smu.top/biomedical-knowledge-mining-book/

Repository from Github https://github.comYuLab-SMU/clusterProfiler

YuLab-SMU/clusterProfiler Issues

cnetplot() in the latest clusterProfiler, v4.14.4, does not work correctly
Updated 8 days ago1
Does comparisonCluster result support dotplot sorting?
Closed 16 days ago1
i am receiving the following error with enrichkegg
Updated 22 days ago7
Unable to Install clusterprofiler on R v4.4.2
Updated 23 days ago1
P.adjust in dotplot different from compareCluster summary
Closed 2 months ago12
`simplify` for output from `clusterProfiler::GSEA`?
Updated 2 months ago2
Comparecluster analysis is not working for me with same data
Updated 2 months ago7
Achieve COG/KOG enrichment analysis using clusterProfiler
Updated 2 months ago1
Meaning of compareClusterResults
Updated 2 months ago1
How to run enrichment analysis of metabolites using clusterProfier
Updated 2 months ago4
Feature Request: Sign Test
Updated 2 months ago
Question about the result of GO:BP analysis: only one or two gene related to one GO term
Updated 3 months ago1
CompareCluster with custom GO annotation
Closed 3 months ago2
enrichKEGG issue：the Description column and ID information are identical in 4.10.0
Updated 3 months ago2
Question regarding custom gene set
Closed 3 months ago9
Can't update package to 4.12.6
Updated 4 months ago1
simplify Function Keeps Identical Gene Sets
Closed 4 months ago5
feature request: LLM generated gene sets
Updated 4 months ago
Unable to Convert Pathway ID to Gene Set
Updated 4 months ago
how to install clusterProfiler 4.2.2 version?
Updated 4 months ago2
Mitochondrial Genes and Annotations missing from EnrichGO
Updated 4 months ago3
smth wrong with enrichGO
Updated 4 months ago1
enricher not working properly
Closed 4 months ago4
I'm having trouble when I use simplify on the result of compareCluster
Closed 4 months ago4
enrichWP error
Closed 5 months ago2
gsePathway not found
Closed 5 months ago1
Dotplot to show only selected pathways from compareCluster result
Closed 5 months ago5
goplot encountered an error
Closed 5 months ago4
goplot no longer works with clusterProfiler 4.12.3
Closed 5 months ago2
KEGG analysis of metabolites
Updated 5 months ago2
Meta-analysis Functionality is Not Available
Updated 5 months ago
错误于fortify.compareClusterResult(object, showCategory = showCategory, : 找不到对象'gcsize
Closed 5 months ago1
enrichWP is not working for a few organisms
Updated 5 months ago3
how to compare different conditions
Updated 6 months ago
gofilter function ERROR: object 'topNode' not found
Updated 6 months ago1
Error: unable to open database file Traceback:
Updated 6 months ago1
using compareCluster to compare gene sets from different species
Updated 6 months ago1
clusterProfiler: BgRatio N value does not equal set gene universe size
Updated 6 months ago1
problem with gseGO()
Updated 7 months ago1
RStudio is crashing when running compareCluster
Updated 7 months ago1
Question about GO terms in clusterProfiler
Updated 7 months ago3
ridgePlot Axis Ticks Spacing is Sometimes Insufficient
Updated 7 months ago1
Can't install clusterProfiler 4.12.3 on R-4.4.0
Updated 7 months ago1
GeneRatio in dotplot as number instead of fraction
Closed 7 months ago9
ERROR in enrichGO,when seting ont = "ALL",Error in data.frame(..., check.names = FALSE) : 行名里有缺失值。
Updated 7 months ago1
dplyr and clusterprofile version 4.10.1
Updated 7 months ago1
enrichKegg function, qvalueCutoff not working, getting as well non-significant results
Updated 8 months ago4
Unable to install r package for clusterProfiler
Updated 8 months ago1
gseKEGG function running indefinitely with a gene list of over 3000 genes
Updated 8 months ago1
No gene can be mapped when using enrichKEGG
Updated 8 months ago11