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Alexander Pico (AlexanderPico)

AlexanderPico

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Company:Gladstone Institutes

Location:San Francisco, CA, USA

Home Page:gladstoneinstitutes.org/scientist/pico

Github PK Tool:Github PK Tool

Organizations
cytoscape
nrnb
wikipathways

Alexander Pico's repositories

bridgedb-app

BridgeDb App for Cytoscape 3

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shinyscape

R Shiny UI for Cytoscape

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AIMS

AIMS - Automated Immune Molecule Separator: An analysis pipeline for distinguishing distinct subsets of Ig and MHC molecules. See below site for documentation

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biothings_explorer

BioThings Explorer: a schema-based client for API interoperability

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BridgeDb

The BridgeDb Library source code

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C3-Boot-Camp

Website to organize information and announcements for the UCSF Computational Cancer Community (C3) Boot Camp

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causalpath_cytoscape_app

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chemViz2

Cheminformatics App for Cytoscape 3

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clusterProfiler

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

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cykeggparser

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cyrface

Bridging Cytoscape with R

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cytocopter

CellNOptR in Cytoscape

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cytoscape-d3

D3.js support for Cytoscape 3

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cytoscapeneo4j

Cytoscape plugin for neo4j

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EnrichmentMapApp

The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.

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grounding-search

A biological entity grounding search service

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Jiffy

A template Jekyll site with wiki functionality

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jsbml

JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (the Systems Biology Markup Language) and data streams. It is an alternative to the mixed Java/native code-based interface provided in libSBML.

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libGPML

Java library for reading / writing GPML files

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pathvisio-book

:book: PathVisio

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pfocr-files

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PhosphoPath

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playground-database

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pmcfigurebot

Query figures indexed by PubMed Central and collect metadata

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retrondb-notebooks

Python notebooks for retrondb transactions

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sandbox-wp-db

Playground for new GPML processing and curation

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shiny-publications

RShiny app to browse a set of papers

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TestRepo

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vital-cytoscape

vital endpoint plugin for cytoscape

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wp-curation-report

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