AlexanderPico

SARS-CoV-2_Alignments

Sequence alignments of SARS-CoV-2 proteins and previously studied proteins

Bioconductor_RCy3_the_new_RCytoscape

Update RCytoscape to work for Cytoscape 3.0 and higher using CyREST

BiocStickers

Stickers for some Bioconductor packages - feel free to contribute and/or modify.

bioentities

Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.

command-dialog

Core App: Command Dialog

community-toolbox

Tools to understand and welcome people into a contributor community

cytoscape-tutorials

Collection of modular Cytoscape tutorials for online presentation using reveal.js

cytoscape.github.com

Cytoscape org web site.

Cytoscape_workflows

collection of notebooks with different cytoscape workflows

datasciencecoursera

datasharing

The Leek group guide to data sharing

docthis

RStudio addin to create skeleton documentation for functions and data.frames

ExData_Plotting1

Plotting Assignment 1 for Exploratory Data Analysis

medsavant

MedSavant is a search engine for genetic variants

mind-documentation

MIND Documentation

mjcbase

An R package of useful utilities that I find useful on a day to day basis.

nix-install-deb-multi-user

Install Nix in multi-user mode on Debian (Ubuntu, etc.)

nrnb.github.io

website code for the national resource for network biology

org.pathvisio.wpclient

Plugin for PathVisio that provides a WikiPathways client.

pathvisio

PathVisio - pathway editor, visualization and analysis software

pathvisiojs

New PathVisio JavaScript viewer

PebbleTextWatch

Pebble Text Watch implementation with animation

ProgrammingAssignment2

Repository for Programming Assignment 2 for R Programming on Coursera

rwikipathways

R client package for the WikiPathways API.

scNetViz

Single-Cell RNA Seq analysis and visualization package for Cytoscape

svg-pan-zoom

JavaScript for panning and zooming an SVG image from the mouse and programmatically.

tidySmartphoneData

process for making tidy subset of Samsung Smartphone Dataset

TRONCO

Repository of the TRanslational ONCOlogy library, which includes various algorithms (such as CAPRESE and CAPRI) and the Pipeline for Cancer Inference (PICNIC). Website: https://sites.google.com/site/troncopackage/

website-monitoring

Script and configuration for website monitoring

wp2lod

Java source for conversion of WikiPathways GPML to triples