Cytoscape Consortium

cytoscape.js

Graph theory (network) library for visualisation and analysis

cytoscape-tutorials

Collection of modular Cytoscape tutorials for online presentation using reveal.js

cytoscape.js-dagre

The Dagre layout for DAGs and trees for Cytoscape.js

cytoscape.js-edgehandles

Edge creation UI extension for Cytoscape.js

cytoscape.js-cxtmenu

Context menu for Cytoscape.js

cytoscape.js-cola

The Cola.js physics simulation layout for Cytoscape.js

cytoscape.js-popper

A wrapper for Popper.js that lets you position divs relative to Cytoscape elements

cyjShiny

An R/shiny widget for cytoscape.js

cytoscape.js-klay

The Klay layout algorithm for Cytoscape.js

cytoscape.js-panzoom

Panzoom extension for Cytoscape.js

py4cytoscape

Python library for calling Cytoscape Automation via CyREST

RCy3

New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community

cytoscape-impl

Cytoscape 3 implementation bundles.

cytoscape.js-automove

An extension for Cytoscape.js that automatically updates node positions based on specified rules

cytoscape.js-compound-drag-and-drop

Compound node drag-and-drop UI for adding and removing children

cytoscape.github.com

Cytoscape org web site.

cytoscape.js-blog

The Cytoscape.js blog, using Github pages and Jekyll

appstore

Cytoscape App Store web application code

cytoscape-gui-distribution

Cytoscape 3 desktop version.

enrichment-map-webapp

cytoscape-web

fgsea-service

cytoscape-admin-scripts

Build and maintenance scripts for Cytoscape core developers.

cytoscape-home

enrichmentmap-service

EnrichmentMap microservice

cytoscape.js-pdf-export

PDF export extension for Cytoscape.js

cytoscape-parent

Cytoscape 3.x parent pom file.

cytoscape-pmcfigurebot

Query figures indexed by PubMed Central and collect metadata

cytoscape-support

Cytoscape 3 support bundles.

network-ptm-integration

This repo tracks the work of data-driven addition of phosphorylation sites to proteins in networks (and pathways).