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TOM YAN (YTLogos)

YTLogos

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Company:Hunan Agricultural University, China

Location:Changsha,China

Home Page:https://taoyan.netlify.app

Twitter:@TaoYANLogos

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TOM YAN's starred repositories

expert_readed_books

2021年最新总结，推荐工程师合适读本，计算机科学，软件技术，创业，**类，数学类，人物传记书籍

Stargazers:6005Issues:143Issues:10

gffread

GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more

Language:C++License:MITStargazers:350Issues:9Issues:128

vctrs

Generic programming with typed R vectors

Language:CLicense:NOASSERTIONStargazers:282Issues:13Issues:963

fastq-dl

Download FASTQ files from SRA or ENA repositories.

Language:PythonLicense:MITStargazers:267Issues:5Issues:12

ggmagnify

Create a magnified inset of part of a ggplot object

Language:RLicense:NOASSERTIONStargazers:265Issues:4Issues:25

ComputationalGenomicsManual

Robs manual for the computational genomics and bioinformatics class.

Language:HTMLLicense:MITStargazers:164Issues:8Issues:0

WFA2-lib

WFA-lib: Wavefront alignment algorithm library v2

Language:CLicense:NOASSERTIONStargazers:154Issues:14Issues:56

Work_flow_of_population_genetics

整理常用的群体遗传学分析流程和脚本

Language:PerlLicense:MITStargazers:83Issues:3Issues:7

quarTeT

A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification

Language:PythonStargazers:80Issues:0Issues:0

ggPlantmap

Language:RLicense:MITStargazers:72Issues:5Issues:2

BioEnricher

Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer

Language:HTMLStargazers:61Issues:0Issues:0

VCF2PCACluster

A new simple and efficient software to PCA and Cluster For popolation VCF File

Language:C++License:MITStargazers:47Issues:1Issues:5

AutoHiC

A novel genome assembly pipeline based on deep learning

Language:PythonLicense:MITStargazers:35Issues:0Issues:0

shinyconf2024-shiny101

Shiny 101: Modular App Blueprint workshop ✨

Language:RLicense:MITStargazers:30Issues:0Issues:0

str-analysis

Scripts and utilities related to analyzing short tandem repeats (STRs).

Language:PythonLicense:MITStargazers:26Issues:7Issues:7

TreeProfiler

tree visualization for tree + annotation data

Language:PythonLicense:GPL-3.0Stargazers:26Issues:0Issues:0

danbing-tk

Toolkit for VNTR genotyping and repeat-pan genome graph construction

Language:PythonLicense:BSD-3-ClauseStargazers:21Issues:3Issues:19

VCF2Dis

VCF2Dis: A new simple and efficient software to calculate p-distance matrix based Variant Call Format

Language:C++License:MITStargazers:21Issues:2Issues:1

EnsembleTR

Tools for merging 1000 Genomes calls

Language:PythonStargazers:20Issues:5Issues:10

login

Shiny Login Module

Language:RLicense:GPL-3.0Stargazers:19Issues:0Issues:0

LongTR

Tandem repeat genotyping with long reads

Language:C++License:GPL-2.0Stargazers:18Issues:3Issues:8

ape_pangenome

pangenome analyses for complete genomes of great apes (and gibbon)

Language:RStargazers:17Issues:0Issues:0

TEProf2Paper

TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data

Language:PythonLicense:NOASSERTIONStargazers:16Issues:2Issues:13

Bol_pangenome

Language:PerlStargazers:12Issues:0Issues:0

MetaNet

Network analysis for multi-omics

Language:RStargazers:8Issues:1Issues:1

SRI-Pipeline

Language:PythonStargazers:5Issues:0Issues:0

TRcaller

Precise and ultrafast tandem repeat variant detection

Stargazers:4Issues:0Issues:0

sheep-transcriptome-atlas

Comprehensive time-series transcriptome atlas in response to hypoxia

Language:RStargazers:4Issues:0Issues:0

repeatfinder

fast code for searching for direct and indirect repeats in DNA sequences.

Language:PythonLicense:MITStargazers:3Issues:1Issues:0

CAP-C-in-Arabidopsis

Language:PythonStargazers:1Issues:0Issues:0