gymrek-lab / LongTR

Tandem repeat genotyping with long reads

gymrek-lab/LongTR Issues

Question about output and usage
Updated in 15 hours2
No repeat were detected
Closed a day ago5
VCF incorrectly specifies phased genotypes
Closed 5 days ago3
Feature request: Support remote cram files
Updated a day ago3
Issue Cloning LongTR Repository: Permission Denied
Closed 2 months ago2
Variant position in the output VCF differs from locus coordinates in the input repeat region bed file
Closed 2 months ago2
Test data
Closed 25 days ago6
"Aborting genotyping of the locus as the sequence upstream/downstream of the repeat is too repetitive for accurate genotyping"
Closed 2 months ago2
TR region BED file - are start coordinates 1-based or 0-based?
Closed 2 months ago2
Low base quality score for ONTs data
Closed 3 months ago3
Low base quality score
Closed 4 months ago2
Compiling gives fatal errors
Closed 5 months ago5