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gpt_academic

为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, moss等。

ChatPaper

Use ChatGPT to summarize the arXiv papers. 全流程加速科研，利用chatgpt进行论文全文总结+专业翻译+润色+审稿+审稿回复

expert_readed_books

2021年最新总结，推荐工程师合适读本，计算机科学，软件技术，创业，**类，数学类，人物传记书籍

gptstudio

GPT RStudio addins that enable GPT assisted coding, writing & analysis

literature-books

书籍txt

stringtie

Transcript assembly and quantification for RNA-Seq

rhino

Build high quality, enterprise-grade Shiny apps at speed

doc-ANNOVAR

Documentation for the ANNOVAR software

Ragout

Chromosome-level scaffolding using multiple references

TOGA

TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.

quarTeT

A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification

STRling

Detect novel (and reference) STR expansions from short-read data

BioEnricher

Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer

dcHiC

dcHiC: Differential compartment analysis for Hi-C datasets

iTAK

iTAK

str-analysis

Scripts and utilities related to analyzing short tandem repeats (STRs).

IntegrativeNetworkMap

Shiny_BLAST

TEProf2Paper

TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data

SolEvo_PotatoDele

Use hifi to assembly the Sol genome, and dissecting Sol evo

update-Mo17

Rice_Heterosis

Bol_pangenome

geneHapR

atlas

RNA-Seq and Proteomic Atlas of Maize Development

SRI-Pipeline

Tarvense_transposon_dynamics

eQTL_XGBoost

grn

Maize Gene regulatory network (MaizeGRN)

MassiveQC

The MassiveQC is a python-based tool for quality control of massive RNA-seq data.