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TOM YAN's starred repositories

gffread

GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more

Language:C++MIT353 9 129

vctrs

Generic programming with typed R vectors

Language:CNOASSERTION284 13 966

ggmagnify

Create a magnified inset of part of a ggplot object

Language:RNOASSERTION268 4 26

fastq-dl

Download FASTQ files from SRA or ENA repositories.

Language:PythonMIT268 5 13

ComputationalGenomicsManual

Robs manual for the computational genomics and bioinformatics class.

Language:HTMLMIT166 80

WFA2-lib

WFA-lib: Wavefront alignment algorithm library v2

Language:CNOASSERTION155 15 56

pan-genome-analysis

Processing pipeline for pan-genome visulization and exploration

Language:PythonGPL-3.0130 13 50

Work_flow_of_population_genetics

整理常用的群体遗传学分析流程和脚本

Language:PerlMIT85 3 7

shiny.worker

Intra-session reactivity in Shiny

Language:RNOASSERTION61 26 9

MatrixEQTL

Matrix eQTL: Ultra fast eQTL analysis via large matrix operations

Language:R53 5 30

VCF2PCACluster

A new simple and efficient software to PCA and Cluster For popolation VCF File

Language:C++MIT48 1 5

countup

⏱️ countup.js R htmlwidget

Language:RNOASSERTION38 4 4

flashCard

R package to create a flash Card.

Language:RNOASSERTION37 4 2

AutoHiC

A novel genome assembly pipeline based on deep learning

Language:PythonMIT35 3 25

TreeProfiler

tree visualization for tree + annotation data

Language:PythonGPL-3.02500

VCF2Dis

VCF2Dis: A new simple and efficient software to calculate p-distance matrix based Variant Call Format

Language:C++MIT21 2 1

EnsembleTR

Tools for merging 1000 Genomes calls

Language:Python20 6 11

login

Shiny Login Module

Language:RGPL-3.020 1 4

LongTR

Tandem repeat genotyping with long reads

Language:C++GPL-2.019 3 15

ggcirclepack

Experimental; write up for ggplot2 extenders meet up

Language:R15 1 4

BnaSNPDB

An interactive web portal for exploring SNPs among 1,007 rapeseed germplasm accessions

Language:RGPL-3.012 2 15

HybridExpress

An R package for comparative transcriptomic analyses of hybrids and their progenitors

Language:R8 20

R4BD

R for Big Data (Chinese Version)

Language:C++5 10

WWWG2B

All codes associated with WWWG2B project

Language:Python5 10

DLR_ICF

Language:PythonMIT4 10

DegCre

DegCre is an R package for the association of DEGs to CREs

Language:RNOASSERTION400

TRcaller

Precise and ultrafast tandem repeat variant detection

4 1 1

Lab_Porcine-Adiposes_paper_codes

Language:PythonMIT4 10

sheep-transcriptome-atlas

Comprehensive time-series transcriptome atlas in response to hypoxia

Language:R4 10

CAP-C-in-Arabidopsis

Language:Python100