twlab / TEProf2Paper

TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data

twlab/TEProf2Paper Issues

New Gencode Version
Closed 19 days ago2
How to filter the GTEX normal samples?
Updated 8 hours ago1
How to filter the GTEX normal sample？
Closed a month ago
How to visualize the candidate TE-gene transcripts
Closed 8 hours ago2
Step 11: how to design treatment group versus control
Closed 8 hours ago1
Exonization of TE
Closed 8 hours ago2
Test data for verification purposes?
Closed 5 months ago1
rmskhg38_annotate_gtf_update_test_tpm.py ValueError: invalid literal for int() with base 10: '1,transcript_id'
Closed 6 months ago3
How to get raw reads counts for final all TE-chimeric transcripts in different samples?
Closed 6 months ago2
Inconsistent script naming in usage guide of readme.md
Updated a year ago
UnsatisfiableError during conda installation
Closed a year ago3
no '.stats' out put in step5--Calculate Read Information
Closed a year ago2
Reproducing results for 5'CAGE data
Updated a year ago1
Remove dependency on Xmisc
Updated a year ago
Add Excel file output after Step 10
Updated a year ago
no out_put in rmskhg38_annotate_gtf_update_test_tpm.py process
Closed a year ago3
Applied to Long-read Sequencing Data
Closed a year ago16
All reads (read, startread, endread) were 0 after calculating read information at Step 5
Closed a year ago3