widdowquinn

pyani

Application and Python module for average nucleotide identity analyses of microbes.

find_differential_primers

Code for design of diagnostic PCR primers, and metabarcoding markers.

pilercrpy

Python package for interacting with PILER-CR CRISPR repeat finding output.

sync_rifftrax

Notes on synchronising RiffTrax Just the Jokes with a movie.

ncfp

Program and package that retrieves nucleotide coding sequences from NCBI that correspond to a set of input protein sequences.

SI_Hugouvieux-Cotte-Pattat_2021

Supplementary information for pyani analyses reported in Hugouvieux-Cotte-Pattat et al. (2021) IJSEM, describing the novel genus Paradisiaca

Teaching-SWC-Lessons

Lesson materials I have used when teaching Software Carpentry

2021-01-13_sipbs_workshop

This repository provides a website and MyBinder-based interactive workshop for the 2021 SIPBS Research Day, on using Python to query UniProt.

BMC-database

Space designed to create the Bacterial microcompartment database. Template egg-shell created for begginers.

ideel

Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes

stacs-thesis

A LaTex class for writing theses and dissertations. Includes a skeletal thesis customised to University of St Andrews.

aoc2015

Solutions and data for Advent of Code 2015

aoc2020

Advent of Code solutions and data for 2020

aoc2021

solutions and attempted solutions for Advent of Code 2021: https://adventofcode.com/2021

aoc2022

Code/solutions for Advent of Code 2022

aoc2023

Advent of Code 2023 solutions

aws_delete_vault

Program to delete all archives in an AWS S3 Glacier vault - a prerequisite to deleting the vault itself

bioconda-recipes

Conda recipes for the bioconda channel.

example_MSc_2022

Demonstration repository for MSc projects

lptwitdelete

Script and package to delete Twitter statuses.

pdfcomments

picluster-ansible

This repository contains the Ansible Playbooks used for my Pi Cluster project.

planets

Example repository for Carpentries lesson

shellshare

A modified version of Vitor Baptista's Shellshare: https://github.com/vitorbaptista/shellshare, that is useful for running remote programming tutorials when there might be several shellshare windows to keep track of.

SI_Holmes_etal_2020

Supplementary information for Holmes et al. (2020)

SI_Kamat_et_al_Clostridium_diversity

Supplementary information for the Kamat _et al._ paper "Genomic diversity of novel strains of mammalian gut microbiome derived _Clostridium_ XIVa strains is driven by mobile genetic element acquisition"

tayport-community-website

A community website project

widdowquinn

widdowquinn.github.io

Widdowquinn's website.

zfcc