widdowquinn

github-readme-stats

:zap: Dynamically generated stats for your github readmes

awesome-design-patterns

A curated list of software and architecture related design patterns.

pygwalker

PyGWalker: Turn your pandas dataframe into an interactive UI for visual analysis

Sloth

Mac app that shows all open files, directories, sockets, pipes and devices in use by all running processes. Nice GUI for lsof.

FriendsDontLetFriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

datacamp-light

Convert any blog or website to an interactive learning platform for data science

ComplexHeatmap

Make Complex Heatmaps

issue-tracker-behaviors

pooch

A friend to fetch your data files

Online_R_learning

Online R learning for applied statistics

bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

metaWRAP

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

quarto-webr

Quarto Extension to Embed webR for HTML Documents, RevealJS, Websites, Blogs, and Books.

UpSetPlot

Draw UpSet plots with Matplotlib

RCrashCourse_Book

A GitBook version of the R Crash Course self-tutorials: https://colauttilab.github.io/RCrashCourse

skani

Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.

slurm

Cookiecutter for snakemake slurm profile

d3-hypertree

HTML5 SVG Hyperbolic Tree Implementation.

studentProjectAllocation

An implementation of Abraham et al's (2007) algorithm for allocation of student projects

primer3plus

Primer3Plus is an advanced web interface for primer3.

mastiff

bioinformatics1

Code for the Bioinformatics 1 Course - School of Informatics, The University of Edinburgh

2022-search-sra-with-mastiff

Tools and utilities for making use of mastiff

kSpider

A simple yet powerful sequence clustering tool.

jhustatcomputing2023

Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776) in Fall 2023

cazomevolve

`cazomevolve` ('cazome-evolve') investigates the evolution of CAZomes, and identifies CAZy families that co-occur within the genomes of candidate species, more frequently than would be expected by lineage.

2022-sourmash-sens-spec

Playing around with sens/spec measurements for simulated stuff

ChIPdb

A Chromatin ImmunoPrecipitation database for PROkaryotic organisms.

slurm-jobinfo

SYRINGAE