Amine M. Remita's repositories
-fork-awesome-normalizing-flows
Awesome resources on normalizing flows.
-fork-beer
Bayesian enrichment estimation in R
-fork-benchmark_VAE
Unifying Generative Autoencoder implementations in Python
-fork-physher
Phylogenetic analysis of genetic data
-fork-PyTorch-VAE
A Collection of Variational Autoencoders (VAE) in PyTorch.
-fork-vbpi-nf
Code for improved variational Bayesian phylogenetic inference with normalizing flows
-fork-vbsky
Variational Bayesian skyline infers evolutionary models from large amounts of phylogenetic data.
phd_projects
Thesis projects
-fork-amortized-optimization-tutorial
Tutorial on amortized optimization for learning to optimize over continuous domains
-fork-BDA_course_Aalto
Bayesian Data Analysis course at Aalto
-fork-bito
Python-interface C++ library for Bayesian phylogenetics via optimization
-fork-genslm
GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics
-fork-HaROLD-1
Haplotype Reconstruction of Longitudinal Deep sequencing data
-fork-just-the-class
A modern, highly customizable, responsive Jekyll template for course websites.
-fork-llama
Inference code for LLaMA models
-fork-torchtree
A probabilistic framework in PyTorch for phylogenetic models
-fork-vbpi-gnn
Code for learnable topological features for phylogenetic inference via graph neural networks
dna_bayes_clf
Probabilistic framework for DNA classification
mlr_kgenomvir
evaluation of Multinomial Logistic Regression for Kmer-based GENOMe VIRus classification
nnTreeVB_Exp
A repository for the evaluation experiments of nnTreeVB
pytorch_mlr
A modern implementation of Multinomial Logistic Regression with SGD training