strobemers

There are 1 repository under strobemers topic.

ksahlin / strobealign
Aligns short reads using dynamic seed size with strobemers
alignment illumina bioinformatics strobemers short-read-mapping
Language:C++ 125
ksahlin / ultra
Long-read splice alignment with high accuracy
bioinformatics long-read-sequencing alignment strobemers
Language:Python 59
CMU-SAFARI / BLEND
BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applications: 1) finding overlapping reads and 2) read mapping. Described by Firtina et al. (published in NARGAB https://doi.org/10.1093/nargab/lqad004)
bioinformatics blend de-novo-assembly genome-analysis genome-assembly minimizers read-mapping strobemers fuzzy-seeds read-overlapping seed-matching spaced-seeds
Language:C 34
shenwei356 / strobemers
A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
strobemers
Language:Go 14
luispedro / strobefilter
Benchmarking pre-filtering large databases before short-read mapping
bioinformatics metagenomics strobemers
Language:Python 1

ksahlin / strobealign