seed-matching

There are 0 repository under seed-matching topic.

CMU-SAFARI / BLEND
BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applications: 1) finding overlapping reads and 2) read mapping. Described by Firtina et al. (published in NARGAB https://doi.org/10.1093/nargab/lqad004)
bioinformatics blend de-novo-assembly genome-analysis genome-assembly minimizers read-mapping strobemers fuzzy-seeds read-overlapping seed-matching spaced-seeds
Language:C 34

CMU-SAFARI / BLEND