Medhat's repositories
covid-pipeline
Covid-19 analysis pipeline
pileup_consensus
Script that takes samtools pileup output and write consensus fasta file as output.
long-read-pipelines
Long read production pipelines
Clair
Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling
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Clouseau
A QC suite for large VCF files
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fritzsedlazeck.github.io
My lab github page
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HiFiTargetEnrichment
A repo for the Twist HiFi capture/snakemake workflow
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HiFiTargetEnrichmentQC
QC scripts for the Twist Alliance Dark Genes Panel
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snakepipes
Customizable workflows based on snakemake and python for the analysis of NGS data
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