repeatmasker

There are 0 repository under repeatmasker topic.

• clemgoub / dnaPipeTE

  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).

  annotation-pipelineannotationsassemblybioinformaticsgenomicspipelinerepeatmaskertransposable-elementstrinity
  Language:Dockerfile 47

• andrewgull / MGERT

  Mobile Genetic Elements Retrieving Tool

  bioinformaticsbioinformatics-pipelineflanking-regionsgenome-assembliesmgert-pipelineorfpipelinerepeatmaskerrepeatmodeler
  Language:Python 14

• LKremer / TEcov

  A pipeline to to determine the repeat content of genes and their neighboring regions.

  bioinformatics-pipelinegenomegenomicsrepeatmaskertransposable-elements
  Language:Python 7

• bioinfo-ut / AluMine

  Scripts for discovery and genotyping polymorphic Alu element insertions in human genomes

  genomicsalignment-free-algorithmk-mertransposable-elementalurepeatmasker
  Language:Perl 6

• ValentinaBoP / TransposableElements

  code to analyse RepeatMasker output

  repeatmaskertransposable-elementsevolution
  Language:HTML 6

• darcyabjones / pante

  A pipeline for predicting and masking transposable elements in multiple genomes.

  multiple-genomesrepeatmodelermasking-transposable-elementsrepeatmaskertransposable-elementsnon-coding-rnabioinformaticsgenomics
  Language:Groovy 2