bioinfo-ut

Bioinfo, IMCB, UT's repositories

A k-mer based program for the identification of known plasmids from whole-genome sequencing reads

Language:PerlBSD-3-Clause35 9 27

A toolkit for performing set operations - union, intersection and complement - on k-mer lists.

Language:CGPL-3.032 7 27

Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains

Language:PythonGPL-3.018 2 23

Gene copy number prediction from k-mer frequencies

Language:PythonGPL-3.09 4 6

Scripts for discovery and genotyping polymorphic Alu element insertions in human genomes

Language:PerlGPL-3.06 2 1

A pipeline to indentify taxon-specific k-mers in plant genomes

Language:Python400

A bacterial identification program for fast identification of bacterial strains from raw sequencing reads

Language:Perl3 2 7

Language:PerlBSD-3-Clause2 30

A sequence masking tool, both Primer3 integrated and standalone variants

Language:CGPL-3.02 2 1

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