protein-embedding

There are 1 repository under protein-embedding topic.

LirongWu / awesome-protein-representation-learning
Awesome Protein Representation Learning
protein-embedding protein-modeling protein-representation-learning protein-sequences representation-learning
562
tbepler / protein-sequence-embedding-iclr2019
Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
protein-embedding language-model protein-modeling protein-structure protein-sequence protein-representation-learning deep-learning recurrent-neural-networks pytorch
Language:Python 253
LirongWu / MAPE-PPI
Code for ICLR 2024 (Spotlight) paper "MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding"
codebook masked-modeling microenvironment ppi-networks protein-embedding protein-protein-interaction protein-representation-learning vocabulary
Language:Python 170
tbepler / prose
Multi-task and masked language model-based protein sequence embedding models.
protein-sequences language-model sequence-embedding protein-embedding deep-learning representation-learning
Language:Python 92
bioinfodlsu / phage-host-prediction
Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding proteins of phages. It presents improvements over using handcrafted sequence properties and eliminates the need to manually extract and select features from phage sequences
bioinformatics genomics phage-host-prediction protein protein-embedding protein-language-model proteomics representation-learning transfer-learning transformer machine-learning
Language:Jupyter Notebook 9
Eereenah / gnn-thesis
Code for Binding Affinity Prediction with Graph Neural Networks
binding-affinity drug-target-interactions graph-neural-network protein-embedding pytorch
Language:Jupyter Notebook 2
OpenProteinAI / openprotein-python
Simple python interface for the OpenProtein.AI REST API.
generative-ai language-model machine-learning protein-embedding protein-language-model proteins python
Language:Jupyter Notebook 1