nucleosome-positioning

There are 0 repository under nucleosome-positioning topic.

• tobiasrausch / ATACseq

  Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)

  atac-seqsequencingchromatinnucleosome-positioningnext-generation-sequencingpeak-detectionatac-seq-pipeline
  Language:Shell 72

• nf-core / mnaseseq

  MNase-seq analysis pipeline using BWA and DANPOS2.

  nf-corenextflowworkflowmnase-seqnucleosome-positioningnucleosome-mapsnucleosomepipeline
  Language:Nextflow 10

• ArnaudDroitLab / RJMCMC

  RJMCMC: Genome-Wide Nucleosome Positioning in R

  rnucleosome-positioningreversible-jump-mcmcmultinomial-dirichlet-priorbayesian-t-mixture
  Language:R 3

• jipingw / DNAcycP

  DNAcycP: a deep learning tool for DNA cyclizablity prediction

  dna-bendabilitydna-mechanicsdna-cyclizabilitynucleosome-positioningdeep-learningmachine-learning
  Language:Python 2

• adeschen / consensusSeekeR

  This R package compares genomic positions and genomic ranges from multiple experiments to extract common regions. The size of the analyzed region is adjustable as well as the number of experiences in which a feature must be present in a potential region to tag this region as a consensus region. Tested on ChIP-Seq peaks and nucleosome positions.

  r-packagegenomic-data-analysischip-seq-analysisnucleosome-positioning
  Language:R 1

• crickbabs / BABS-MNASeqPE

  This pipeline has been superceeded. Please use >>>

  bioinformaticsmnase-seqnextflowpipelinenucleosome-positioningnucleosomepaired-endbioinformatics-pipeline
  Language:Groovy 0

• FSUgenomics / SRSFN

  SRSF framework for nucleosome positioning analysis

  srsffunctional-data-analysisfunctional-data-structuregenomicsngs-analysisngs-pipelinengsnucleosome-positioningnucleosomesgene-expressionshape-analysis
  Language:PostScript 0

• gportella / nucleosome_positioning_proxies

  Tools to assess the intrinsic nucleosome positioning from sequence information alone

  dna-elasticitynucleosome-positioning
  Language:C++ 0

• jeffmak / crispr-cas9-epigenetics

  Code for "Comprehensive computational analysis of epigenetic descriptors affecting CRISPR-Cas9 off-target activity"

  crispr-cas9epigeneticsnucleosome-positioningnucleosomespytorchxgboost
  Language:Jupyter Notebook 0

• Swart-lab / loxodes-nucleosomes-workflow

  snakemake-workflownucleosome-positioningloxodes
  Language:Jupyter Notebook 0

• ArnaudDroitLab / RJMCMCNucleosomes

  Bioconductor Package - Genome-Wide Nucleosome Positioning in R with an optimized section in C++

  rbioconductornucleosomesnucleosome-positioningreversible-jump-mcmcmultinomial-dirichlet-priorbayesian-t-mixturegenome-wide-profilingc-plus-plus
  Language:R

• drpatelh / nf-core-mnaseseq

  See the main fork of this repository here >>>

  nf-corenextflowworkflowmnase-seqnucleosome-positioningnucleosome-mapsnucleosomepipeline
  Language:Nextflow

• hungyok / nuctf_equi_bai

  Statistical equilibrium models for computing occupancy of nucleosome and transcription-factors.

  nucleosome-positioningremodeling-factorsstatistical-equilibrium-modelsoptimizationtf-binding-motifs
  Language:MATLAB

• Swart-lab / mnutils

  MNase-seq utilities

  nucleosome-positioning
  Language:Python