iq-tree

There are 0 repository under iq-tree topic.

• Cibiv / IQ-TREE

  Efficient phylogenomic software by maximum likelihood

  maximum-likelihoodphylogenomicsphylogeneticsmixture-modeliq-treeultrafast-bootstrapmodel-selection
  Language:C++ 181

• reslp / iqtreeGUI

  iqtreeGUI - A graphical user interface for IQ-TREE

  phylogeneticsiq-treegraphicalmaximum-likelihoodphylogenetic-trees
  Language:Python 3

• joshlvmh / iqtree_arm_neon

  IQ-TREE ported to work for systems with ARM NEON ISA

  armintrinsicsneonsse2neoniq-treesseintel-sse-intrinsicssimdsimd-intrinsics
  Language:C++ 2

• btmartin721 / ddrad_scripts

  Random scripts for dealing with ddRAD data, including output from pyRAD

  pyradddradradseqstatsiq-tree
  Language:Python 1

• Mapleia / BIOL417

  Phylogeny related tools packaged into Dockerized containers.

  dockeriq-treephylogenyubcnotungpartition-finder
  Language:PowerShell 1

• juliawiggeshoff / astral-species-tree

  This is a Snakemake workflow that calculates maximum-likelihood gene trees with IQ-TREE and 100 bootstrap replicates for each tree. Then, consensus trees are produced and combined to infer a species tree following the multispecies coalescent model with ASTRAL. Imported from my GitLab.

  astralmultispecies-coalescentsnakemakespecies-treeworkflowiq-treemaximum-likelihood
  Language:Python 0

• juliawiggeshoff / supermatrix-tree

  Snakemake workflow that concatenate MSA files into a supermatrix and calculates a maximum likelihood tree. Imported from my GitLab

  iq-treemaximum-likelihoodsnakemakesupermatrix-phylogenetic-analysesworkflow
  Language:Python 0

• sennettm / Column_Cross_Validation_LOCO_XV

  A new model-selection criteria for phylogenetics to calculate the predictive log-likelihood score.

  iq-treemodel-selection-criteriaphylogeneticsancestral-sequence-reconstructioncross-validationmolecular-evolution
  Language:Python