CIBIV - Center for Integrative Bioinformatics Vienna (Cibiv)

CIBIV - Center for Integrative Bioinformatics Vienna

Cibiv

Geek Repo

Location:Vienna, Austria

Home Page:http://www.cibiv.at

Github PK Tool:Github PK Tool

CIBIV - Center for Integrative Bioinformatics Vienna's repositories

IQ-TREE

Efficient phylogenomic software by maximum likelihood

Language:C++License:GPL-2.0Stargazers:180Issues:18Issues:237

NextGenMap

NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows analysing large scale datasets even with increased SNP rates or higher error rates (e.g. caused by specialized experimental protocols) and avoids biases caused by highly variable regions in the genome.

Language:C++License:NOASSERTIONStargazers:85Issues:12Issues:52

Teaser

A tool to benchmark mappers and different parameters within minutes

Language:HTMLLicense:MITStargazers:43Issues:8Issues:17

trumicount

Correctly counting molecules using unique molecular identifiers (UMIs)

Language:TeXLicense:AGPL-3.0Stargazers:9Issues:0Issues:0

BODscore

Scoring method for identified SNPs

Language:CStargazers:4Issues:0Issues:0

gwpcR

Corrects UMI-based NGS data for phantom UMIs and lost molecules using a mechanistic model of UMI-based experiments

Language:RLicense:AGPL-3.0Stargazers:3Issues:4Issues:0

Cibiv.github.io

CIBIV website

Language:HTMLStargazers:2Issues:0Issues:0

cibiv-beamer-template

CIBIV latex beamer template base on mtheme (https://github.com/matze/mtheme)

Language:TeXStargazers:1Issues:12Issues:0

EvoNAPS

EvoNAPS is a database providing input parameter settings for extensive sequence simulations to be used in phylogenetic studies.

Language:PythonStargazers:1Issues:6Issues:0
Language:PythonLicense:MITStargazers:1Issues:0Issues:0

UMI-tools

Tools for handling Unique Molecular Identifiers in NGS data sets

Language:PythonLicense:MITStargazers:1Issues:0Issues:0

zone-net

Neural Network predicting if the underlying tree of a given MSA is a Farris- or Felsenstein-like tree

Language:PythonLicense:AGPL-3.0Stargazers:1Issues:0Issues:0

ipoolseq-pipeline

A pipeline for the analysis of iPool-Seq data

Language:PythonLicense:AGPL-3.0Stargazers:0Issues:0Issues:0

bioconda-recipes

Conda recipes for the bioconda channel.

Language:ShellStargazers:0Issues:4Issues:0

PDA

Phylogenetic Diversity Analyzer

Language:C++License:GPL-2.0Stargazers:0Issues:0Issues:0

py-remoter

Task queue which keeps tracks of jobs and their exit status

Stargazers:0Issues:0Issues:0
Language:PythonStargazers:0Issues:0Issues:0

SANjar

Simulates the deterministic and stochastic versions of the SAN model

Language:RStargazers:0Issues:6Issues:0