CIBIV - Center for Integrative Bioinformatics Vienna's repositories
NextGenMap
NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows analysing large scale datasets even with increased SNP rates or higher error rates (e.g. caused by specialized experimental protocols) and avoids biases caused by highly variable regions in the genome.
trumicount
Correctly counting molecules using unique molecular identifiers (UMIs)
Cibiv.github.io
CIBIV website
cibiv-beamer-template
CIBIV latex beamer template base on mtheme (https://github.com/matze/mtheme)
ipoolseq-pipeline
A pipeline for the analysis of iPool-Seq data
bioconda-recipes
Conda recipes for the bioconda channel.
PDA
Phylogenetic Diversity Analyzer
py-remoter
Task queue which keeps tracks of jobs and their exit status