Mapleia / BIOL417

Phylogeny related tools packaged into Dockerized containers.

BIOL 417

Repository holding scripts for the activities in the labs.

Prerequisites

1. Install docker from here.

Lab 4

partition_finder

Run the following command to build and run partition_finder.

.\lab_4\docker_run.ps1

It unpacks the zip, moves the sample .cfg, and packs a python environment for partition finder (that was downloaded from GitHub Release).

Lab 6

Notung

Run the following command to build and run Notung.

.\lab_6\build_notung.ps1
.\lab_6\run_notung.ps1

To change the files, edit the lab_6\run_notung.ps1 file.

IQ-TREE

Run the following command to build and run IQ-TREE.

.\lab_6\run_iqtree.ps1

To change the files, edit the lab_6\run_iqtree.ps1 file.