andrewjpage

andrewjpage's repositories

tiptoft

Predict plasmids from uncorrected long read data

Language:PythonGPL-3.041 3 18

krocus

Predict MLST directly from uncorrected long reads

Language:PythonGPL-3.027 5 11

gubbins

Language:CGPL-2.04 20

Roary

Pan genome pipeline

Language:PerlNOASSERTION4 30

socru

Language:PythonGPL-3.02 20

vr-codebase

The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute

Language:PerlNOASSERTION1 20

albatradis

AlbaTraDIS

Language:GnuplotGPL-3.0010

ariba

Antibiotic Resistance Identification By Assembly

Language:PythonGPL-3.0010

Bio-ENA-DataSubmission

Language:PerlNOASSERTION020

Bio-Path-Find

Language:PerlNOASSERTION010

Bio-ReferenceManager

Language:PerlNOASSERTION010

Bio-Tradis

Language:PerlGPL-3.0020

Bio-VertRes-Config

Language:PerlNOASSERTION010

bioconda-recipes

Conda recipes for the bioconda channel.

Language:Shell000

circlator

A tool to circularize bacterial genome assemblies

Language:PythonNOASSERTION010

datasets-sars-cov-2

Language:PerlApache-2.0010

gemstone-workflows

Isolates and plate metagenomic PE Illumina workflows for GEMSTONE

Language:WDLGPL-3.0000

iva

de novo virus assembler of Illumina paired reads

Language:PythonNOASSERTION010

ntEdit

✏️scalable genome assembly polishing

Language:C++GPL-3.0010

patchwork

The Composer of ggplots

Language:RNOASSERTION000

pathinder-client

GPL-3.0000

phylo-reports

Language:Jupyter Notebook010

Porechop

adapter trimmer for Oxford Nanopore reads

Language:C++GPL-3.0010

scagaire

Language:PythonGPL-3.0000

seanandrory

Language:HTML020

seqbox

local sequence management lightweight tools

Language:Python000

shownotes

020

singularity

Language:PerlGPL-3.0010

training-material

A collection of Galaxy-related training material

Language:HTMLNOASSERTION010

typhinator

Language:RGPL-3.0010