gene-sequencing

There are 0 repository under gene-sequencing topic.

• bacalhau-project / bacalhau

  Compute over Data framework for public, transparent, and optionally verifiable computation

  p2pdistributediotbioinformatics-pipelinedata-analysisdata-engineeringdata-sciencedecentralizedvideo-processingbatch-processinggene-sequencinglogging-frameworkorchestration-frameworkinsulatorsdecentralized-computingai-artai-data-collectionai-pipeline
  Language:Go 649

• Owaiskhan9654 / Gene-Sequence-Primer-

  Gene and Primer Sequence Analysis for SARS-CoV-2, EGFR(Non Small Lung Cancer Cell), Influenza DNAs ### How can I check my Oligo primers to ensure there are no significant primer design issues? - The difference between melting temperatures (Tm) of the primers should be less than 5°C. - The GC content should be between 35-80% or equivalent to the product being amplified. - The Delta G value of any self-dimers, hairpins, and heterodimers should be weaker (more positive) than -9.0 kcal/mole. Positive numbers indicate that the actual secondary structure shown will not form at all. - Avoid 3' complementarity between the two primers to prevent primer dimers. The IDT OligoAnalyzer APIs can be used to assess these different criteria for a proposed oligo. #### [Reference](https://sg.idtdna.com/pages/support/faqs/how-can-i-check-my-pcr-primers-using-the-oligoanalyzer-program-to-ensure-there-are-no-significant-primer-design-issues-)

  dna-sequencesegfrgene-sequencinginfluenzaprimer-designsars-cov-2
  Language:Jupyter Notebook 7

• mycolab / mycolab

  Suite of mycology applications and tools for automating common lab workflows.

  mycologygene-sequencingphylogenetic-trees
  Language:Python 4

• adam-stogsdill / GeneAnalysisProgramming

  Compilation of Gene Analysis Algorithms and Mutation Search Algorithms for hopefully some useful Machine Learning application later.

  gene-analysis-algorithmsgene-sequencingbandregionarmalgorithmchromosome
  Language:Java 2

• bean5 / paper-jod-genetic-alignment

  Whitepaper on application of genetic alignment on religious discourses. Base corpus: LDS Journal of Discourses comprised of hundreds of religious discourses.

  aigene-sequencinggenetic-algorithmsgenetic-alignmentjournal-of-discourseslatexmlnlppaperresearchwhitepaper
  Language:TeX 2

• jaretkadlec / Local-Sequence-Alignment-Project

  This project alligns genetic sequences locally

  bioinformaticscomputational-biologygene-sequencingjupyter-notebookpython
  Language:Jupyter Notebook 0

• Marie-Schmit / Advanced-sequencing-and-genome-assembly

  Perform a de-novo assembly of an unknown organism and report workflows and findings. Illumina PE 101x2, insert size 350bps +/- 50, PacBio long reads. Develop a Java program with a GUI to vizualise and report quality metrics for the best three assembly attempts.

  bioinformaticsbiological-data-analysisbiologygene-sequencingjava-software
  Language:HTML 0

• shez1461 / find-quads

  Demo using Python/FastAPI/JS/jQuery/Bootstrap/ChartJS - (Backend + Frontend UI) framework with an input to add sequences, search for the 'G' Quadruplexes that displays the start & end positions in a table & a bar graph for better yield rate.

  oligiosgene-sequencingpythonfastapijavascriptjquerybootstrapchartjs
  Language:HTML 0

• IlyinVyacheslav / BioInformatics

  Gene download from NCBI database, sequence alignment and clusterization, realization of different bioinformatics algorithms within ITMO 4 sem course

  bioinformaticssequence-alignmentrna-seqgene-sequencingitmoitmo-labssequence-clusteringncbincbi-database
  Language:Jupyter Notebook