edlib

There are 0 repository under edlib topic.

CMU-SAFARI / SneakySnake
SneakySnake:snake: is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.org/abs/1910.09020.
sequence-aligner fpga gpu hardware-accelerator minimap2 edlib smith-waterman needleman-wunsch pre-alignment-filtering sequence-alignment long-reads short-reads wavefront-alignment
Language:VHDL 46
kojix2 / ruby-edlib
ruby-edlib is a wrapper for edlib
bioinformatics edlib ruby
Language:C++

CMU-SAFARI / SneakySnake