count-data

There are 1 repository under count-data topic.

PLN-team / PLNmodels
A collection of Poisson lognormal models for multivariate count data analysis
poisson-lognormal-model count-data network-inference pca multivariate-analysis r-package
Language:R 54
OUTRIDER
gagneurlab / OUTRIDER
OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
outlier-detection rna-seq r expression-analysis diagnostics mendelian-genetics count-data
Language:R 48
jalal246 / textics
📉 JavaScript Text Statistics that counts lines, words, chars, and spaces.
text statistics counter string string-search search-in-text textics tools characters linesearch wordsearch count-lines count-data string-calculator get-info mytools memo curl counts-lines stream
Language:JavaScript 36
rpact
rpact-com / rpact
rpact: Confirmatory Adaptive Clinical Trial Design and Analysis
adaptive-design analysis clinical-trials group-sequential-designs r simulation count-data power-calculation sample-size-calculation validated
Language:R 23
anjalisilva / MPLNClust
R Package With Shiny App to Perform and Visualize Clustering of Count Data via Mixtures of Multivariate Poisson-log Normal Model
count-data mpln-distribution mcmc-em icl aic mixture-model variational-em bic aic3 model-based-clustering r-package model-selection data-simulation data-visualization heatmaps lineplot posterior-probability shinyapp
Language:R 16
TeamMacLean / atacr
Analysing Capture Seq Count Data
rnaseq genomics analysis capture count-data bioinformatics r atac-seq data science
Language:R 14
tqch / poisson-jump
Official Implementation of Paper "Learning to Jump: Thinning and Thickening Latent Counts for Generative Modeling" (ICML 2023)
count-data diffusion-models generative-modeling
Language:Python 11
anjalisilva / mixMVPLN
R Package to Perform Clustering of Three-way Count Data Using Mixtures of Matrix Variate Poisson-log Normal Model With Parameter Estimation via MCMC-EM, Variational Gaussian Approximations, or a Hybrid Approach Combining Both.
clustering mixture-models count-data modelselection matrix-variate-distributions model-based-clustering mcmc-em data-simulation stan visualization variational-gaussian
Language:R 8
BioGenies / countfitteR
cancer cancer-imaging-research count-data count-distribution foci
Language:CSS 4
GeoBosh / Countr
R package for flexible univariate count models based on renewal processes
count-data renewal-process sports-modelling
Language:R 4
ihmeuw-msca / CorrelatedCounts
Modeling correlated count data
mixed-effects-models expectation-maximization count-data
Language:Python 4
jalal246 / textics-stream
Text Statistics For Node Streams
textics-stream stream text statistics counter string string-manipulation string-search search-in-text textics characters linesearch wordsearch count-lines count-data string-calculator get-info mytools node transformer
Language:JavaScript 4
MFaymon / spINAR
Semiparametric and parametric estimation and bootstrapping of integer-valued autoregressive (INAR) models.
bootstrapping count-data parametric-estimation penalization semiparametric-estimation simulation time-series validation
Language:R 4
vpnsctl / mixpoissonreg
Mixed Poisson Regression for Overdispersed Count Data
negative-binomial-regression poisson-inverse-gaussian-regression influence-analysis local-influence diagnostics count-data
Language:R 3
blog-neas / INAr
Generation, estimation and testing of INteger Autoregressive models
count-data r-package time-series r
Language:C++ 2
krishan57gupta / ROSeq
ROSeq - A rank based approach to modeling gene expression with filtered and normalized read count matrix. Takes in the complete filtered and normalized read count matrix, the location of the two sub-populations and the number of cores to be used.
tung vignette tung-dataset rank populations tutorial gene-expression-profiles gene-expression normalization tmm count-data
Language:R 2
devancakra / WB-Register
Web Programming Class | UPN Veteran Jatim | Website-Bot Register for Robotics community | Final Project
website js ngrok crud register search count-data validation webhook botman bootstrap css error-handling html php telegram-bot composer xampp git mysql
Language:PHP 1
ICON-in-R / NMA
Minimal network meta-analysis with BUGS from R.
binomial-data count-data median r survival-data hazard-ratios bugs
Language:R 1
louisowen6 / GLM_CountData
Mortality Rate Prediction based on Age and Cigarette Types in Canada using Generalized Linear Model for Count Data
glm data-science r count-data
1
dilsaddt / AldabraAtoll_Aldabra_giant_tortoise_seasonal_habitat_use
Analysis of seasonal habitat-use patterns of Aldabra giant tortoises of Aldabra Atoll, Seychelles using temporary emigration models.
bayesian count-data habitat-use imperfect-detection jags r seasonality transect-survey aldabra-atoll aldabra-giant-tortoise aldabrachelys-gigantea
Language:R 0
junsoukchoi / ZiGDAG
R package for model-based causal discovery for zero-inflated count data
bayesian-network causal-discovery directed-acyclic-graph zero-inflated count-data single-cell-rna-seq
Language:R 0
marinavannucci / dmbvs
R/C code for Bayesian variable selection for Dirichlet-multinomial regression models. Accompany paper: Wadsworth et al. (2016). An Integrative Bayesian Dirichlet-Multinomial Regression Model for the Analysis of Taxonomic Abundances in Microbiome data. BMC Bioinformatics 18:94.
dirichlet-multinomial count-data bayesian-inference microbiome-analysis variable-selection
Language:C 0
cpauvert / PLNnetwork-workflow
Infer network from count data within Snakemake using a sparse Poisson lognormal model (PLNnetwork)
snakemake snakemake-workflows microbiome-analysis network-inference count-data
Language:R
jemus42 / poisson-regression
Poisson-Regression und ihre Leiden
regression bookdown r count-data german-language
Language:TeX
zipkinlab / Davis_etal_2022_EcolAndEvol
Davis, K. L., Silverman, E. D., Sussman, A. L., Wilson, R. R., Zipkin, E. F. (2022). Errors in aerial survey count data: Identifying pitfalls and solutions. Ecology and Evolution 12:e8733.
abundance aerial-survey count-data counting-error imperfect-detection nondetection species-misidentification study-design
Language:R

count-data

PLN-team / PLNmodels

gagneurlab / OUTRIDER

jalal246 / textics

rpact-com / rpact

anjalisilva / MPLNClust

TeamMacLean / atacr

tqch / poisson-jump

anjalisilva / mixMVPLN

BioGenies / countfitteR

GeoBosh / Countr

ihmeuw-msca / CorrelatedCounts

jalal246 / textics-stream

MFaymon / spINAR

vpnsctl / mixpoissonreg

blog-neas / INAr

krishan57gupta / ROSeq

devancakra / WB-Register

ICON-in-R / NMA

louisowen6 / GLM_CountData

dilsaddt / AldabraAtoll_Aldabra_giant_tortoise_seasonal_habitat_use

junsoukchoi / ZiGDAG

marinavannucci / dmbvs

cpauvert / PLNnetwork-workflow

jemus42 / poisson-regression

zipkinlab / Davis_etal_2022_EcolAndEvol