Machine Learning for Integrative Genomics lab

Machine Learning for Integrative Genomics lab's repositories

momix-notebook

Language:Jupyter NotebookGPL-3.060 8 6

OT-scOmics

This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in between single-cell omics data.

Language:PythonGPL-3.035 5 1

Mowgli

Single-cell multi-omics integration using Optimal Transport

Language:PythonGPL-3.033 3 11

HuMMuS

Molecular interactions inference from single-cell multi-omics data

Language:PythonAGPL-3.014 3 4

scconfluence

A novel method for single-cell diagonal integration: scConfluence

Language:Python7 1 2

scNET

jupyther notebook comparing reproducibility of single-cell network inference algorithms

Language:Jupyter Notebook4 5 2

mowgli_reproducibility

Data and scripts to reproduce experiments for Mowgli.

Language:Python3 10

GRnnData

Awesome GRN enhanced AnnData toolkit

Language:PythonGPL-3.01 30

scc_reproducibility

Language:Jupyter Notebook1 1 1