alternative-polyadenylation

There are 1 repository under alternative-polyadenylation topic.

• VCCRI / Sierra

  Discover differential transcript usage from polyA-captured single cell RNA-seq data

  scrna-seqisoformsalternative-polyadenylationalternative-splicingsierra
  Language:R 48

• iRNA-COSI / APAeval

  Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differential usage across RNA-seq samples

  bioinformaticsrna-seqbenchmarkalternative-polyadenylationopen-science
  Language:Python 13

• YiPeng-Gao / scDaPars

  Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)

  alternative-polyadenylationsingle-cell-rna-seq
  Language:R 10

• Vivianstats / MAAPER

  Model-based analysis of APA using 3' end-linked reads

  alternative-polyadenylationbioinformatics-toolrna-seq
  Language:R 6

• bcgsc / tasrkleat-TCGA-analysis-scripts

  This repo stores codes for the analysis of tasrkleat results on TCGA RNA-Seq dataa

  tcgatcga-datacleavage-sitesalternative-polyadenylationrna-seq
  Language:Jupyter Notebook 4

• bcgsc / tasrkleat

  Targeted analysis of alternative polyadenylation of candidate genes with RNA-Seq data

  cleavage-sitesrna-seqalternative-polyadenylationgoogle-cloud-platformcloud-computingdockerde-novo-assembly
  Language:Python 0

• Mayrlab / mca-utrome

  3' UTR cleavage site identification from the Mouse Cell Atlas

  alternative-polyadenylationbioinformaticscleavage-sitesscrna-seqsnakemake-pipeline
  Language:R 0

• federicomarini / trend-db

  Home to the development of the TREND-DB application

  trendseqalternative-polyadenylationalternative-splicingrnai-screeningdata-explorationenrichment-analysisdatabase
  Language:R

• Imamachi-n / PASScan

  Determine polyA sites from 3'end sequence data

  rna-seq3-endalternative-polyadenylationngs
  Language:Python

• zyxue / kleat

  Cleavage site prediction via de novo assembly

  de-novo-assemblyalternative-polyadenylationrna-seqtranscriptome-assemblycleavage-sites
  Language:Python