Jon Sanders's repositories
nf-reads-profiler
Nextflow pipeline to run Metaphlan3 and Humann3 on QC-ed reads.
nf-core-configs
Config files used to define parameters specific to compute environments at different Institutions
nfc-test-datasets
Test data to be used for automated testing with the nf-core pipelines
mag
Assembly and binning of metagenomes
Voron-Trident
Voron Trident CoreXY 3D Printer design
opulo-feeder
Source for LumenPnP Feeders
Voron-Construct
"This is the Construct. It's our loading program. We can load anything... From clothing to equipment, weapons, training simulations; anything we need." ― Morpheus
MAXFeederShield
Arduino Mega shield for controlling part feeders for Open PNP
snake_strainer
Snakemake workflow for running inStrain on metagenomes
inStrain
Bioinformatics program inStrain
lumenpnp
The LumenPnP is an open source pick and place machine.
drep
Rapid comparison and dereplication of genomes
sn-mg-pipeline
Snakemake pipeline for basic processing of metagenomic data from the lab
smk-simple-slurm
A simple Snakemake profile for Slurm without --cluster-config
KlipperToolboard
A 3D printer tool head controller board
opentrons_functions
A collection of functions compatible with the Opentrons API
Voron-Hardware
Cool Hardware designed by the Voron Design group
kiln-controller
Turns a Raspberry Pi into an inexpensive, web-enabled kiln controller.
Sanders-etal-2022-analysis
Analysis notebooks used in Sanders et al 2022
anvio
An analysis and visualization platform for 'omics data
codiv-tools
A toolkit for exploring host:microbe codiversification
PositronV3
A upside-down, fast, portable, and compact 3D printer
measure_thermal_behavior
Scripts for measuring and displaying thermal behavior on Voron 3D printers