tanaes

snakemake_assemble

Modular snakemake workflow for assembly-based metagenomics

tetrapod_microbiome_analysis

An analysis of the tetrapod microbiome

Dehydrator

Precision control for food dehydrators

oecophylla

shotgun pipeline

snarkmark

a snakemake workflow for benchmarking HTC systems for bioinformatics

2019_Cornell_Microbiome_Hackathon

Docs and links for the 2019 Microbiome Hackathon at Cornell

atropos-multiqc

MultiQC plugin for Atropos. (beta)

AuthBox

calour

exploratory and interactive microbiome analyses based on heatmaps

deblur

Deblur is a greedy deconvolution algorithm based on known read error profiles.

do-all-animals-need-microbiome_review_ant-fig

emp

Data, code and analysis results for the Earth Microbiome Project.

EMP_impact

estimating impact factor for EMP studies

labman

lab manager for plate maps and sequence flows

Microbiome_Phylo_Diversity_Workshop

Moeller_Opentrons_Labware

Custom labware library for Moeller Opentrons protocols

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

MultiQC_TestData

Test data for MultiQC. See https://github.com/ewels/MultiQC

NSF_COA_GooSchol_parser

A Jupyter notebook for parsing your Google Scholar list for NSF COA purposes

pyvenn

2 ~ 6 sets venn diagram for python

q2-fragment-insertion

QIIME2 plugin for fragment insertion

q2-phylofactor

qiime2R

Import qiime2 artifacts to R

qiita

Qiita - A multi-omics databasing effort

qp-shotgun

ratsnake_shotgun

Snakemake testbed for shotgun integration into Qiita

scikit-bio

Core objects, functions and statistics for working with biological data in Python.

script_bin

A collection of potentially useful scripts

sntest

quick snakemake tests

The-Doot-Changer

Files and designs for The Doot Changer