tanaes

snakemake_anvio

snakemake rules for running anvio

snakemake_shotqual

Snakemake rules for parallel QC of shotgun data

ascii2dna

what it says on the tin

BOLD_get

Code for downloading a consensus DNA sequence for a set of taxa from the BOLD repository

cmi-workshops

codiversification

decontaminate

heatsequer

look at the secret life of bacteria

itol_tree

Some utils for interacting with iToL API

labadmin

Administration website for the Knight Lab

MUMmer

MUMmer for HPC

plate-mapper

pycoQC

Python 3 package for Jupyter Notebook, computing metrics and generating plots from Oxford Nanopore Albacore report

qiime

Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests

qiime_tools

qtp-target-gene

smsk

Snakemake skeleton - Build workflows with Snakemake

snakemake_codiversification

A snakemake workflow for rapid execution of codiversification analysis

snakemake_kneaddata

Snakemake workflow for running kneaddata

sneval_assemble

Evaluation pipeline for the snakemake_assemble workflow

TaxonNamesResolver

Automatically search taxon names against the Global Names Resolver.