Jon Sanders's repositories

BLV_MGN_cube-remix

An ongoing remix of BLV's legendary MGN cube 3D printer

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KilnHat

PCB for running a kiln from a Raspberry Pi

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VoronUsers

Voron Community mods, slicer profiles and firmware configurations.

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BLV

Here you'll find the latest Duet RRF 3.#.# firmware configurations for the BLV AM8 and Cube

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Clanks-Klipper-Configs

Klipper config files for use with Klipper firmware

Marlin

Marlin is an optimized firmware for RepRap 3D printers based on the Arduino platform. | Many commercial 3D printers come with Marlin installed. Check with your vendor if you need source code for your specific machine.

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metagenomics_pooling_notebook

Jupyter notebook to assist wet lab shotgun pipeline

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Voron-2

Voron 2 CoreXY 3D Printer design

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bactopia

A flexible pipeline for complete analysis of bacterial genomes

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birdatron_9000

Build specs for the Birdatron 9000 incubator

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CodeParty

Miscellanea from MoellerLab CodeParty

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culture-collector

A Snakemake workflow for characterizing and organizing microbial isolate genome sequences

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dehumanizer

rapidly rid reads of horrid humans

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gapfisher

A project to use Adaptive Sampling to target metagenomic assembly gaps

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Houtz_etal_2021-NHP_microbiome

Reproducibility data and code for Houtz et al 2021, "Predictable and host-species-specific humanization of gut microbiota in captive primates"

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klipper

Klipper is a 3d-printer firmware

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ktkit

kraken toolkit

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lab_scripts

general useful labs scripts

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opentrons_generated_protocols

Placee to stash generated protocols

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Peromyscus_metagenomes

Analysis scripts for Peromyscus gut microbiome catalogue

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PlasForest

A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes

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Quinn_metagenomics_pipeline

Stub workflow for a Snakemake metagenomics pipeline

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reticulatus

A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads

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slic3r-profiles

Contributed profiles for Slic3r; compatible with PrusaSlicer.

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Tiny-M

based on Voron V0 , but for 2020 Typ-I Nut 5 Alu profiles

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trim_eval

short snakemake workflow for evaluation mg assembly params

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Voron-0

Voron 0 CoreXY 3D Printer design

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