Jon Sanders's repositories
BLV_MGN_cube-remix
An ongoing remix of BLV's legendary MGN cube 3D printer
VoronUsers
Voron Community mods, slicer profiles and firmware configurations.
Clanks-Klipper-Configs
Klipper config files for use with Klipper firmware
metagenomics_pooling_notebook
Jupyter notebook to assist wet lab shotgun pipeline
birdatron_9000
Build specs for the Birdatron 9000 incubator
culture-collector
A Snakemake workflow for characterizing and organizing microbial isolate genome sequences
dehumanizer
rapidly rid reads of horrid humans
Houtz_etal_2021-NHP_microbiome
Reproducibility data and code for Houtz et al 2021, "Predictable and host-species-specific humanization of gut microbiota in captive primates"
lab_scripts
general useful labs scripts
opentrons_generated_protocols
Placee to stash generated protocols
Peromyscus_metagenomes
Analysis scripts for Peromyscus gut microbiome catalogue
PlasForest
A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes
Quinn_metagenomics_pipeline
Stub workflow for a Snakemake metagenomics pipeline
reticulatus
A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads
slic3r-profiles
Contributed profiles for Slic3r; compatible with PrusaSlicer.