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Kamil Slowikowski (slowkow)

slowkow

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Company:Mass General Brigham

Home Page:https://slowkow.com

Twitter:@slowkow

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Organizations
cuSTEMized
immunogenomics
villani-lab

Kamil Slowikowski's starred repositories

firefly-iii

Firefly III: a personal finances manager

Language:PHPLicense:AGPL-3.0Stargazers:14470Issues:157Issues:5674

uv

An extremely fast Python package installer and resolver, written in Rust.

Language:RustLicense:Apache-2.0Stargazers:11988Issues:27Issues:1476

teable

✨ The Next Gen Airtable Alternative: No-Code Postgres

Language:TypeScriptLicense:AGPL-3.0Stargazers:7273Issues:40Issues:64

maturin

Build and publish crates with pyo3, cffi and uniffi bindings as well as rust binaries as python packages

Language:RustLicense:Apache-2.0Stargazers:3329Issues:26Issues:565

python-pptx

Create Open XML PowerPoint documents in Python

Language:PythonLicense:MITStargazers:2210Issues:76Issues:855

framework

A static site generator for data apps, dashboards, reports, and more. Observable Framework combines JavaScript on the front-end for interactive graphics with any language on the back-end for data analysis.

Language:TypeScriptLicense:ISCStargazers:1917Issues:20Issues:540

unstorage

💾 Unstorage provides an async Key-Value storage API with conventional features like multi driver mounting, watching and working with metadata, dozens of built-in drivers and a tiny core.

Language:TypeScriptLicense:MITStargazers:1590Issues:7Issues:148

dropflow

A CSS layout engine

Language:TypeScriptLicense:MITStargazers:1213Issues:10Issues:20

ocrs

Rust library and CLI tool for OCR (extracting text from images)

Language:RustLicense:Apache-2.0Stargazers:937Issues:7Issues:26

LoG

Level of Gaussians

Language:PythonLicense:NOASSERTIONStargazers:584Issues:39Issues:19

parquet-wasm

Rust-based WebAssembly bindings to read and write Apache Parquet data

Language:RustLicense:Apache-2.0Stargazers:475Issues:7Issues:104

glasbey

Algorithmically create or extend categorical colour palettes

Language:PythonLicense:MITStargazers:164Issues:3Issues:4

rust-parallel

Fast command line app in rust/tokio to run commands in parallel. Similar interface to GNU parallel or xargs plus useful features. Listed in Awesome Rust utilities.

Language:RustLicense:MITStargazers:109Issues:5Issues:14

TCRdock

python tools for TCR:peptide-MHC modeling and analysis

Language:PythonLicense:MITStargazers:62Issues:6Issues:18

granges

A Rust library and command line tool for working with genomic ranges and their data.

Language:RustStargazers:57Issues:0Issues:0

RcppThread

R-friendly threading in C++

Language:C++License:NOASSERTIONStargazers:54Issues:4Issues:23

kWIP

De novo estimates of genetic relatedness from next-gen sequencing data

Language:C++License:GPL-3.0Stargazers:44Issues:10Issues:26

pairwise-alignment

Catalogue of pairwise alignment algorithms and benchmarks

Language:RustStargazers:25Issues:2Issues:0

TreeDist

Calculate distances between phylogenetic trees in R

Language:RStargazers:25Issues:5Issues:48

alignmentviewer

Multiple sequence alignment visualizer

Language:JavaScriptLicense:MITStargazers:25Issues:6Issues:43

TCRGP

TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequences from both TCRα and TCRβ chains from single-cell data and learn which CDRs are important in recognizing the different epitopes.

Language:Jupyter NotebookLicense:MITStargazers:24Issues:2Issues:3

TCRconv

TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TCRs and convolutional neural networks for the prediction.

Language:Jupyter NotebookLicense:MITStargazers:22Issues:3Issues:3

luajr

R package for LuaJIT scripting

Language:CLicense:NOASSERTIONStargazers:18Issues:2Issues:3

EPIC-TRACE

Repo for TCR-pMHC binding prediction with EPIC-TRACE

Language:PythonStargazers:4Issues:1Issues:0

dms-viz.github.io

Interactive tool for visualizing site-level data on a protein structure

Language:JavaScriptLicense:MITStargazers:4Issues:1Issues:68

airrc2hlaguessr

Convert TCR repertoires from AIRR-C to HLAGuessr format

Language:PythonStargazers:2Issues:1Issues:0

hla3

weight of evidence of HLA allele expression based on bulk TCR beta-chain repertoires

Language:PythonLicense:MITStargazers:2Issues:2Issues:1

HLAfreq

Aggregate HLA allele frequencies data from allelefrequencies.net at large multi population scale

Language:PythonLicense:MITStargazers:2Issues:0Issues:0

data-loader-examples

A collection of easy to explore and reuse data loader examples in Observable Framework projects.

Language:JavaScriptStargazers:1Issues:0Issues:0

APC_quarto

Interactive data visualizations with Quarto and Observable JS for Article Processing Charge data from Butler et al (QSS 2023)

Stargazers:1Issues:1Issues:0